Rroxscaffold_4G00300840

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
21205662 .. 21206058
397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300840.1

Sequence Viewer

Length: 183 bp
ATGGGTTGTGCTTTTCTCTTGAGCAGTGATGGTGCAGCTTCATTGGTGCTAGTGAGTGGGGAAAAGGCACTTGAACTTGGGTTACATGCTCTTGTTCTTCATTCCTCCGGAAAACCAACCCCTTTGGTACCGTATCATGCTCTTCTGCTGCAATATGTGCTAACTCGTGAAGCTTCACAATAA

Protein Analysis

60

Amino Acids

6.27

Weight (kDa)

6.22

Isoelectric Point (pI)

23.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 127
AccIII TCCGGA 1 cut(s) 107
AfaI GTAC 1 cut(s) 129
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 2 cut(s) 38, 173
AluI AGCT 2 cut(s) 38, 173
Aor13HI TCCGGA 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 35, 148
Asp718I GGTACC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 165
BbvI GCAGC 2 cut(s) 47, 135
BccI CCATC 1 cut(s) 23
BfaI CTAG 1 cut(s) 50
BisI GCNGC 2 cut(s) 36, 149
BlsI GCNGC 2 cut(s) 37, 150
BmiI GGNNCC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 107
BseXI GCAGC 2 cut(s) 47, 135
BsgI GTGCAG 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 107
BspEI TCCGGA 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 129
BspQI GCTCTTC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 47, 135
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Csp6I GTAC 1 cut(s) 128
CviAII CATG 2 cut(s) 86, 137
CviJI RGCY 2 cut(s) 38, 173
CviKI_1 RGCY 2 cut(s) 38, 173
CviQI GTAC 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
FaeI CATG 2 cut(s) 89, 140
FaiI YATR 3 cut(s) 87, 138, 156
FatI CATG 2 cut(s) 85, 136
Fnu4HI GCNGC 2 cut(s) 36, 149
Fsp4HI GCNGC 2 cut(s) 36, 149
FspBI CTAG 1 cut(s) 50
GluI GCNGC 2 cut(s) 36, 149
HapII CCGG 1 cut(s) 108
Hin1II CATG 2 cut(s) 89, 140
HindIII AAGCTT 1 cut(s) 171
HpaII CCGG 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 19, 108, 167
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 35, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
Hsp92II CATG 2 cut(s) 89, 140
Kpn2I TCCGGA 1 cut(s) 107
KpnI GGTACC 1 cut(s) 131
LguI GCTCTTC 1 cut(s) 147
LpnPI CCDG 1 cut(s) 121
Lsp1109I GCAGC 2 cut(s) 47, 135
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 81
MboII GAAGA 2 cut(s) 89, 134
MnlI CCTC 1 cut(s) 115
MroI TCCGGA 1 cut(s) 107
MspI CCGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 157
NlaIII CATG 2 cut(s) 89, 140
NlaIV GGNNCC 1 cut(s) 129
NspI RCATGY 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 147
PkrI GCNGC 2 cut(s) 37, 150
PspN4I GGNNCC 1 cut(s) 129
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 2 cut(s) 36, 149
SetI ASST 2 cut(s) 40, 175
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SspMI CTAG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 132
TscAI CASTG 1 cut(s) 31
TseI GCWGC 2 cut(s) 35, 148
TspDTI ATGAA 2 cut(s) 30, 89
TspRI CASTG 1 cut(s) 31
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.