Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

8570079 .. 8573472

Gene Structure 3394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGGTCAGGGGCTGAGTTGCGGAGAGGCACGGGAGAGTAGTGGTGGTCTGTTTGGGGCGGTGGAGAATGGGGAGCTGGAGTTGGTTGAGGATATGGTGGAAGCTGACCCAAGAGTTTTGGAGCTGAGAAGAGGCCATGGGAAGCTCTCTGCTTTGCATGTGGCTGCTGCTAGTGGTCGGATCGAGGTGCTTTCGATGCTTTTGGATCGGTCTGTTAGTCCTGATATAGTGAATCGCCATAAGCAGACTCCGCTGATGTTGGCTGCAATGCATGGCAATATTGCTTGCGTTAGAAAGCTTATCCAAGCAGGAGCAAATATATTGATGTTTGACTCATTAAATGGAAGAACTTGCCTGCATTATGCTGCTTACTATGGCCATTCAGATTGCCTCCAAGCCTTTCTTTCCGCCGCACAATCCACCACAGTCGCAAATTCTTGGGGATTTGCGAGATTTGTGAATATTAGAGATGGAGGTGGTGCAACCCCATTGCACTTGGCTGCCCGACAAAGCCGGGCAGAGTGTGTGCATGTTCTTCTGGATAGTGGGGCACTTGTTTGTGCTTCAACTGGTGGATACAGCTACCCTGGAAGCACTCCACTTCATTTAGCGGCTCGTGCTGGTTCTTTAGATTCTATTCGAGAGTTGCTTGCTTGGGGAGCAGATCGGCTTCATTTAGATTCATCAGGGAGAATACCTTACCTGGTTGCTCTGAAGCACAAGCATCAAGCATGTGCAGCGATACTGAACCCTTCATCAGCAGAGCCTCTTGTCTGGCCATCACCATTGAAGTTCATCAGCGAACTCAATCCAGAAGCTAAAGCTTTGTTGGAGAGGGCGTTAATGGAATCAAACATGGAGAGGGAGAAAGCTATCTTGAAGGAGATAGTCTCCATTCCATCTCCTTTGCATTCAGATGTAGAGGCTGATGATTATGCCTCTGAGGCCAGCGATGTGGACCTATGCTGCATATGCTTTGATCAGTTATGCACAATTGAGGTTGGGCCATGCGGCCATCAGATGTGTGCTCATTGCACCCTTGCTCTGTGCTGCCACAAGAAGCCCGACCCTTCATCTATATCTTGCCCTACAGTCCCTGTTTGCCCCTTTTGTCGAACCAGCATCACCCAACTAGTTGTTGCCAATATCAAGGCCAACAATGATGTGGAGGTGGAAATGAGTCCCTCGAAGCCGAGGAAATCAAGAAAGTCTAATGTTAGTGAAGGCAGCAGTAGCTTCAAGGGCTTGTCGCCTTTGGGATCATTTGGAAGATTGGGTGGTCGCAGTTCAGCAAGGGTATCTGCTGAATGCAATGAAGACATCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4

Protein Analysis

444

Amino Acids

47.31

Weight (kDa)

6.35

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	17 - 108	1e-13	Ankyrin repeats (3 copies)
Ank_4	PF13637	52 - 101	3.3e-09	Ankyrin repeats (many copies)
Ank	PF00023	82 - 109	3.7e-06	Ankyrin repeat
Ank_4	PF13637	88 - 135	1.8e-10	Ankyrin repeats (many copies)
Ank_2	PF12796	114 - 185	5.7e-11	Ankyrin repeats (3 copies)
RING_XB3-XBAT31	PF24921	321 - 377	7.9e-21	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	21, 59, 251, 408, 411, 611, 1011
AclWI	GGATC	3 cut(s)	188, 213, 1267
AcoI	YGGCCR	3 cut(s)	376, 776, 1012
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	734
AgsI	TTSAA	4 cut(s)	567, 790, 880, 1240
AhlI	ACTAGT	1 cut(s)	1132
AjnI	CCWGG	2 cut(s)	586, 702
Alw21I	GWGCWC	1 cut(s)	1030
Alw26I	GTCTC	1 cut(s)	895
AlwI	GGATC	3 cut(s)	188, 213, 1267
AlwNI	CAGNNNCTG	2 cut(s)	13, 1097
AoxI	GGCC	7 cut(s)	133, 376, 776, 945, 1004, 1012, 1152
ApeKI	GCWGC	9 cut(s)	164, 167, 263, 365, 500, 737, 966, 1050, 1227
ApoI	RAATTY	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	958, 1004
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	2 cut(s)	774, 1117
AvaII	GGWCC	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	553
BalI	TGGCCA	2 cut(s)	378, 778
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	1323
Bbv12I	GWGCWC	1 cut(s)	1030
BbvI	GCAGC	9 cut(s)	151, 154, 250, 352, 487, 749, 953, 1037, 1239
BccI	CCATC	4 cut(s)	464, 787, 907, 1023
BciT130I	CCWGG	2 cut(s)	588, 704
BciVI	GTATCC	1 cut(s)	569
BclI	TGATCA	1 cut(s)	979
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	895
BcuI	ACTAGT	1 cut(s)	1132
BfaI	CTAG	2 cut(s)	171, 1133
BfmI	CTRYAG	1 cut(s)	1089
BfuI	GTATCC	1 cut(s)	569
BglI	GCCNNNNNGGC	1 cut(s)	944
Bme1390I	CCNGG	3 cut(s)	515, 588, 704
Bme18I	GGWCC	1 cut(s)	958
BmgT120I	GGNCC	2 cut(s)	958, 1004
BmrFI	CCNGG	3 cut(s)	515, 588, 704
BmsI	GCATC	3 cut(s)	186, 733, 1131
BpiI	GAAGAC	1 cut(s)	1323
BplI	GAGNNNNNCTC	2 cut(s)	875, 907
BpmI	CTGGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	515
BsaJI	CCNNGG	3 cut(s)	136, 586, 1193
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 824, 854
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	4 cut(s)	273, 488, 1030, 1318
BseBI	CCWGG	2 cut(s)	588, 704
BseDI	CCNNGG	3 cut(s)	136, 586, 1193
BseMI	GCAATG	4 cut(s)	273, 488, 1030, 1318
BseMII	CTCAG	3 cut(s)	5, 116, 933
BseNI	ACTGG	1 cut(s)	574
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	9 cut(s)	151, 154, 250, 352, 487, 749, 953, 1037, 1239
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	7 cut(s)	135, 378, 778, 947, 1006, 1014, 1154
BsiHKAI	GWGCWC	1 cut(s)	1030
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	1079, 1167
BsmAI	GTCTC	1 cut(s)	895
BsmFI	GGGAC	2 cut(s)	1079, 1167
BsmI	GAATGC	2 cut(s)	910, 1313
BsnI	GGCC	7 cut(s)	135, 378, 778, 947, 1006, 1014, 1154
Bsp1286I	GDGCHC	2 cut(s)	553, 1030
Bsp143I	GATC	5 cut(s)	180, 205, 664, 979, 1259
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	7 cut(s)	21, 59, 251, 408, 411, 611, 1011
BspANI	GGCC	7 cut(s)	135, 378, 778, 947, 1006, 1014, 1154
BspCNI	CTCAG	3 cut(s)	6, 117, 934
BspPI	GGATC	3 cut(s)	188, 213, 1267
BsrDI	GCAATG	4 cut(s)	273, 488, 1030, 1318
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	136, 586, 1193
BssMI	GATC	5 cut(s)	180, 205, 664, 979, 1259
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	588, 704
Bst4CI	ACNGT	2 cut(s)	427, 1093
Bst6I	CTCTTC	1 cut(s)	124
BstC8I	GCNNGC	4 cut(s)	286, 356, 651, 949
BstDEI	CTNAG	3 cut(s)	14, 125, 942
BstDSI	CCRYGG	1 cut(s)	136
BstKTI	GATC	5 cut(s)	183, 208, 667, 982, 1262
BstMAI	GTCTC	1 cut(s)	895
BstMBI	GATC	5 cut(s)	180, 205, 664, 979, 1259
BstMWI	GCNNNNNNNGC	9 cut(s)	196, 250, 617, 659, 737, 944, 972, 1233, 1242
BstNI	CCWGG	2 cut(s)	588, 704
BstNSI	RCATGY	3 cut(s)	161, 533, 735
BstSCI	CCNGG	3 cut(s)	513, 586, 702
BstSFI	CTRYAG	1 cut(s)	1089
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	9 cut(s)	151, 154, 250, 352, 487, 749, 953, 1037, 1239
BstV2I	GAAGAC	1 cut(s)	1323
BstXI	CCANNNNNNTGG	1 cut(s)	955
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	7 cut(s)	135, 378, 778, 947, 1006, 1014, 1154
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	966
Cac8I	GCNNGC	4 cut(s)	286, 356, 651, 949
CaiI	CAGNNNCTG	2 cut(s)	13, 1097
Cfr13I	GGNCC	2 cut(s)	958, 1004
CsiI	ACCWGGT	1 cut(s)	702
CviAII	CATG	7 cut(s)	137, 158, 272, 530, 732, 856, 1008
DdeI	CTNAG	3 cut(s)	14, 125, 942
DpnI	GATC	5 cut(s)	182, 207, 666, 981, 1261
DpnII	GATC	5 cut(s)	180, 205, 664, 979, 1259
EaeI	YGGCCR	3 cut(s)	376, 776, 1012
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	586, 702
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	7 cut(s)	140, 161, 275, 533, 735, 859, 1011
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	2 cut(s)	1079, 1167
FatI	CATG	7 cut(s)	136, 157, 271, 529, 731, 855, 1007
FauNDI	CATATG	1 cut(s)	971
FbaI	TGATCA	1 cut(s)	979
FspBI	CTAG	2 cut(s)	171, 1133
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	7 cut(s)	135, 378, 778, 947, 1006, 1014, 1154
HapII	CCGG	1 cut(s)	514
Hin1II	CATG	7 cut(s)	140, 161, 275, 533, 735, 859, 1011
HindIII	AAGCTT	2 cut(s)	296, 822
HinfI	GANTC	7 cut(s)	232, 247, 332, 632, 680, 848, 1180
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	2 cut(s)	774, 1117
Hpy166II	GTNNAC	1 cut(s)	958
Hpy188I	TCNGA	6 cut(s)	180, 385, 714, 916, 943, 1020
Hpy188III	TCNNGA	6 cut(s)	221, 539, 641, 812, 877, 1203
Hpy8I	GTNNAC	1 cut(s)	958
HpyAV	CCTTC	4 cut(s)	762, 874, 1080, 1217
HpyCH4III	ACNGT	2 cut(s)	427, 1093
HpyF10VI	GCNNNNNNNGC	9 cut(s)	196, 250, 617, 659, 737, 944, 972, 1233, 1242
HpyF3I	CTNAG	3 cut(s)	14, 125, 942
Hsp92II	CATG	7 cut(s)	140, 161, 275, 533, 735, 859, 1011
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	5 cut(s)	180, 205, 664, 979, 1259
LmnI	GCTCC	4 cut(s)	73, 121, 311, 659
Lsp1109I	GCAGC	9 cut(s)	151, 154, 250, 352, 487, 749, 953, 1037, 1239
LweI	GCATC	3 cut(s)	186, 733, 1131
MabI	ACCWGGT	1 cut(s)	702
MaeI	CTAG	2 cut(s)	171, 1133
MalI	GATC	5 cut(s)	182, 207, 666, 981, 1261
MboI	GATC	5 cut(s)	180, 205, 664, 979, 1259
MboII	GAAGA	5 cut(s)	141, 357, 527, 1281, 1328
MfeI	CAATTG	1 cut(s)	993
MhlI	GDGCHC	2 cut(s)	553, 1030
MlsI	TGGCCA	2 cut(s)	378, 778
MluCI	AATT	2 cut(s)	433, 993
MluNI	TGGCCA	2 cut(s)	378, 778
MlyI	GAGTC	3 cut(s)	241, 326, 1189
MmeI	TCCRAC	2 cut(s)	158, 810
Mox20I	TGGCCA	2 cut(s)	378, 778
Mph1103I	ATGCAT	1 cut(s)	273
MscI	TGGCCA	2 cut(s)	378, 778
MseI	TTAA	2 cut(s)	338, 842
MslI	CAYNNNNRTG	1 cut(s)	915
Msp20I	TGGCCA	2 cut(s)	378, 778
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	3 cut(s)	515, 588, 704
MunI	CAATTG	1 cut(s)	993
Mva1269I	GAATGC	2 cut(s)	910, 1313
MvaI	CCWGG	2 cut(s)	588, 704
MwoI	GCNNNNNNNGC	9 cut(s)	196, 250, 617, 659, 737, 944, 972, 1233, 1242
NciI	CCSGG	1 cut(s)	515
NcoI	CCATGG	1 cut(s)	136
NdeI	CATATG	1 cut(s)	971
NdeII	GATC	5 cut(s)	180, 205, 664, 979, 1259
NlaIII	CATG	7 cut(s)	140, 161, 275, 533, 735, 859, 1011
NmeAIII	GCCGAG	1 cut(s)	1218
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	3 cut(s)	161, 533, 735
PctI	GAATGC	2 cut(s)	910, 1313
PfeI	GAWTC	4 cut(s)	232, 632, 680, 848
PleI	GAGTC	3 cut(s)	241, 326, 1188
PpsI	GAGTC	3 cut(s)	241, 326, 1188
Psp6I	CCWGG	2 cut(s)	586, 702
PspGI	CCWGG	2 cut(s)	586, 702
PspPI	GGNCC	2 cut(s)	958, 1004
PstNI	CAGNNNCTG	2 cut(s)	13, 1097
RseI	CAYNNNNRTG	1 cut(s)	915
SaqAI	TTAA	2 cut(s)	338, 842
Sau3AI	GATC	5 cut(s)	180, 205, 664, 979, 1259
Sau96I	GGNCC	2 cut(s)	958, 1004
SchI	GAGTC	3 cut(s)	241, 326, 1189
ScrFI	CCNGG	3 cut(s)	515, 588, 704
SduI	GDGCHC	2 cut(s)	553, 1030
SexAI	ACCWGGT	1 cut(s)	702
SfaNI	GCATC	3 cut(s)	186, 733, 1131
SfcI	CTRYAG	1 cut(s)	1089
SinI	GGWCC	1 cut(s)	958
SmiMI	CAYNNNNRTG	1 cut(s)	915
SpeI	ACTAGT	1 cut(s)	1132
Sse9I	AATT	2 cut(s)	433, 993
SsiI	CCGC	7 cut(s)	21, 59, 251, 408, 411, 611, 1011
SspI	AATATT	2 cut(s)	280, 463
SspMI	CTAG	2 cut(s)	171, 1133
StyD4I	CCNGG	3 cut(s)	513, 586, 702
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	427, 1093
TaqI	TCGA	5 cut(s)	183, 194, 640, 1114, 1187
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	433, 993
TauI	GCSGC	3 cut(s)	413, 614, 1014
TfiI	GAWTC	4 cut(s)	232, 632, 680, 848
Tru1I	TTAA	2 cut(s)	338, 842
Tru9I	TTAA	2 cut(s)	338, 842
TseI	GCWGC	9 cut(s)	164, 167, 263, 365, 500, 737, 966, 1050, 1227
TspDTI	ATGAA	7 cut(s)	593, 662, 672, 744, 784, 1062, 1329
VpaK11BI	GGWCC	1 cut(s)	958
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	3 cut(s)	161, 533, 735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1162
XspI	CTAG	2 cut(s)	171, 1133
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.