Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

20852645 .. 20858706

Gene Structure 6062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG222900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAGAGAAGATGAGAATTGGAGGAGGGTTGCTTAGTGGAGCACAATCTAGTATACTTGAGGAGATGAAGTTGTTAAAAGAACTGCAGGATCATTCTGGCAGCGATACTGATGTCTACCAGTACCTAGAGCCTCTGTACAATGACTATCGGAAGTTGAGAAGTAAATTGGCTGATGGACGTGATGTGAAAGTTTATAGCTTTGAAAATACTCCACTTATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTGAAGTAGGAGCAAATGTATTAATGTTCGATTCCCTTCACGGAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCTGCTGCTCAATCAAATCATGTAGCTGTTTCATGGGGATTTGCGCGATTTGTGAATATTAGAGATGGTAGGGGAGCGACCCCGTTGCATTTAGCATCGAGGCAAAGTAGGACCGAATGTGTACATATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGCTGCCCAGGAAGCACTCCGCTGTATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATGGATGACAATCTTTCTGAGTCGCCTGATTTTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

314

Amino Acids

34.18

Weight (kDa)

6.63

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	66 - 125	6.7e-12	Ankyrin repeats (3 copies)
Ank_4	PF13637	75 - 120	8.7e-08	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	55, 117, 601
AccII	CGCG	2 cut(s)	415, 633
AciI	CCGC	4 cut(s)	537, 563, 575, 852
AclWI	GGATC	3 cut(s)	99, 595, 655
AcoI	YGGCCR	2 cut(s)	340, 740
AfaI	GTAC	3 cut(s)	125, 140, 492
AgsI	TTSAA	6 cut(s)	206, 269, 531, 679, 754, 844
AjiI	CACGTC	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	357, 550
AluBI	AGCT	9 cut(s)	201, 262, 395, 515, 695, 704, 725, 769, 788
AluI	AGCT	9 cut(s)	201, 262, 395, 515, 695, 704, 725, 769, 788
Alw21I	GWGCWC	2 cut(s)	46, 517
AlwI	GGATC	3 cut(s)	99, 595, 655
AoxI	GGCC	4 cut(s)	340, 360, 740, 801
ApeKI	GCWGC	6 cut(s)	102, 227, 329, 374, 546, 701
AseI	ATTAAT	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	415, 635
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	738
AvaII	GGWCC	1 cut(s)	480
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BalI	TGGCCA	2 cut(s)	342, 742
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	2 cut(s)	46, 517
BbvI	GCAGC	6 cut(s)	114, 214, 316, 361, 533, 713
BccI	CCATC	6 cut(s)	170, 428, 638, 751, 880, 898
BcgI	CGANNNNNNTGC	4 cut(s)	436, 470, 855, 889
BciT130I	CCWGG	2 cut(s)	359, 552
BfaI	CTAG	2 cut(s)	51, 128
BfmI	CTRYAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	7 cut(s)	103, 228, 330, 375, 547, 576, 702
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	7 cut(s)	104, 229, 331, 376, 548, 577, 703
Bme1390I	CCNGG	2 cut(s)	359, 552
Bme18I	GGWCC	1 cut(s)	480
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	480
BmrFI	CCNGG	2 cut(s)	359, 552
BmsI	GCATC	2 cut(s)	473, 875
BpmI	CTGGAG	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	912
BsaJI	CCNNGG	1 cut(s)	550
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 267, 297, 504, 534
Bse1I	ACTGG	2 cut(s)	121, 538
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	359, 552
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	2 cut(s)	909, 913
BseJI	GATNNNNATC	1 cut(s)	912
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	717, 912
BseNI	ACTGG	2 cut(s)	121, 538
BseRI	GAGGAG	3 cut(s)	39, 77, 791
BseXI	GCAGC	6 cut(s)	114, 214, 316, 361, 533, 713
BsgI	GTGCAG	2 cut(s)	645, 720
Bsh1236I	CGCG	2 cut(s)	415, 633
BshFI	GGCC	4 cut(s)	342, 362, 742, 803
BsiHKAI	GWGCWC	2 cut(s)	46, 517
BsmI	GAATGC	3 cut(s)	663, 877, 889
BsnI	GGCC	4 cut(s)	342, 362, 742, 803
Bsp1286I	GDGCHC	2 cut(s)	46, 517
Bsp1407I	TGTACA	2 cut(s)	138, 490
Bsp143I	GATC	5 cut(s)	91, 243, 587, 628, 647
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	4 cut(s)	537, 563, 575, 852
BspANI	GGCC	4 cut(s)	342, 362, 742, 803
BspCNI	CTCAG	2 cut(s)	718, 913
BspFNI	CGCG	2 cut(s)	415, 633
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	3 cut(s)	99, 595, 655
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	2 cut(s)	138, 490
BsrI	ACTGG	2 cut(s)	121, 538
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	5 cut(s)	91, 243, 587, 628, 647
BssNAI	GTATAC	2 cut(s)	56, 602
Bst1107I	GTATAC	2 cut(s)	56, 602
Bst2UI	CCWGG	2 cut(s)	359, 552
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstAUI	TGTACA	2 cut(s)	138, 490
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	35, 726, 921
BstF5I	GGATG	2 cut(s)	909, 913
BstFNI	CGCG	2 cut(s)	415, 633
BstHHI	GCGC	2 cut(s)	415, 635
BstKTI	GATC	5 cut(s)	94, 246, 590, 631, 650
BstMBI	GATC	5 cut(s)	91, 243, 587, 628, 647
BstMWI	GCNNNNNNNGC	5 cut(s)	543, 555, 623, 632, 701
BstNI	CCWGG	2 cut(s)	359, 552
BstSCI	CCNGG	2 cut(s)	357, 550
BstSFI	CTRYAG	1 cut(s)	86
BstUI	CGCG	2 cut(s)	415, 633
BstV1I	GCAGC	6 cut(s)	114, 214, 316, 361, 533, 713
BstX2I	RGATCY	2 cut(s)	243, 587
BstYI	RGATCY	2 cut(s)	243, 587
BstZ17I	GTATAC	2 cut(s)	56, 602
BsuRI	GGCC	4 cut(s)	342, 362, 742, 803
BtgZI	GCGATG	1 cut(s)	858
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	909, 913
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	2 cut(s)	415, 635
Cfr13I	GGNCC	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	124, 139, 491
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	7 cut(s)	236, 249, 344, 389, 402, 618, 689
CviQI	GTAC	3 cut(s)	124, 139, 491
DdeI	CTNAG	3 cut(s)	35, 726, 921
DpnI	GATC	5 cut(s)	93, 245, 589, 630, 649
DpnII	GATC	5 cut(s)	91, 243, 587, 628, 647
EaeI	YGGCCR	2 cut(s)	340, 740
EciI	GGCGGA	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	515
Eco147I	AGGCCT	1 cut(s)	803
Eco24I	GRGCYC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	357, 550
EcoT22I	ATGCAT	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	517
FaeI	CATG	7 cut(s)	239, 252, 347, 392, 405, 621, 692
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FatI	CATG	7 cut(s)	235, 248, 343, 388, 401, 617, 688
FblI	GTMKAC	3 cut(s)	55, 117, 601
Fnu4HI	GCNGC	7 cut(s)	103, 228, 330, 375, 547, 576, 702
FokI	GGATG	2 cut(s)	916, 920
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	7 cut(s)	103, 228, 330, 375, 547, 576, 702
FspBI	CTAG	2 cut(s)	51, 128
GlaI	GCGC	2 cut(s)	414, 634
GluI	GCNGC	7 cut(s)	103, 228, 330, 375, 547, 576, 702
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	4 cut(s)	342, 362, 742, 803
HhaI	GCGC	2 cut(s)	415, 635
Hin1II	CATG	7 cut(s)	239, 252, 347, 392, 405, 621, 692
Hin6I	GCGC	2 cut(s)	413, 633
HinP1I	GCGC	2 cut(s)	413, 633
HindIII	AAGCTT	2 cut(s)	260, 786
HinfI	GANTC	2 cut(s)	296, 923
HphI	GGTGA	1 cut(s)	738
Hpy166II	GTNNAC	4 cut(s)	56, 118, 491, 602
Hpy188I	TCNGA	4 cut(s)	153, 883, 895, 922
Hpy188III	TCNNGA	3 cut(s)	266, 593, 841
Hpy8I	GTNNAC	4 cut(s)	56, 118, 491, 602
HpyAV	CCTTC	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	9 cut(s)	88, 230, 235, 322, 457, 626, 701, 866, 889
HpyF10VI	GCNNNNNNNGC	5 cut(s)	543, 555, 623, 632, 701
HpyF3I	CTNAG	3 cut(s)	35, 726, 921
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	239, 252, 347, 392, 405, 621, 692
HspAI	GCGC	2 cut(s)	413, 633
Kzo9I	GATC	5 cut(s)	91, 243, 587, 628, 647
LmnI	GCTCC	5 cut(s)	41, 275, 443, 512, 692
Lsp1109I	GCAGC	6 cut(s)	114, 214, 316, 361, 533, 713
LweI	GCATC	2 cut(s)	473, 875
MaeI	CTAG	2 cut(s)	51, 128
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	854
MalI	GATC	5 cut(s)	93, 245, 589, 630, 649
MboI	GATC	5 cut(s)	91, 243, 587, 628, 647
MboII	GAAGA	4 cut(s)	17, 22, 321, 844
MflI	RGATCY	2 cut(s)	243, 587
MhlI	GDGCHC	2 cut(s)	46, 517
MlsI	TGGCCA	2 cut(s)	342, 742
MluCI	AATT	2 cut(s)	18, 167
MluNI	TGGCCA	2 cut(s)	342, 742
MlyI	GAGTC	1 cut(s)	932
Mox20I	TGGCCA	2 cut(s)	342, 742
Mph1103I	ATGCAT	1 cut(s)	237
MscI	TGGCCA	2 cut(s)	342, 742
MseI	TTAA	5 cut(s)	77, 287, 771, 806, 936
MslI	CAYNNNNRTG	2 cut(s)	687, 882
Msp20I	TGGCCA	2 cut(s)	342, 742
MspA1I	CMGCKG	2 cut(s)	565, 725
MspR9I	CCNGG	2 cut(s)	359, 552
Mva1269I	GAATGC	3 cut(s)	663, 877, 889
MvaI	CCWGG	2 cut(s)	359, 552
MvnI	CGCG	2 cut(s)	415, 633
MwoI	GCNNNNNNNGC	5 cut(s)	543, 555, 623, 632, 701
NdeII	GATC	5 cut(s)	91, 243, 587, 628, 647
NlaIII	CATG	7 cut(s)	239, 252, 347, 392, 405, 621, 692
NsiI	ATGCAT	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	803
PctI	GAATGC	3 cut(s)	663, 877, 889
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	7 cut(s)	104, 229, 331, 376, 548, 577, 703
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
PshBI	ATTAAT	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	517
Psp6I	CCWGG	2 cut(s)	357, 550
PspGI	CCWGG	2 cut(s)	357, 550
PspPI	GGNCC	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	2 cut(s)	243, 587
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	3 cut(s)	125, 140, 492
RsaNI	GTAC	3 cut(s)	124, 139, 491
RseI	CAYNNNNRTG	2 cut(s)	687, 882
SacI	GAGCTC	1 cut(s)	517
SaqAI	TTAA	5 cut(s)	77, 287, 771, 806, 936
SatI	GCNGC	7 cut(s)	103, 228, 330, 375, 547, 576, 702
Sau3AI	GATC	5 cut(s)	91, 243, 587, 628, 647
Sau96I	GGNCC	1 cut(s)	480
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	2 cut(s)	359, 552
SduI	GDGCHC	2 cut(s)	46, 517
SfaNI	GCATC	2 cut(s)	473, 875
SfcI	CTRYAG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	480
SmiMI	CAYNNNNRTG	2 cut(s)	687, 882
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	18, 167
SseBI	AGGCCT	1 cut(s)	803
SsiI	CCGC	4 cut(s)	537, 563, 575, 852
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	51, 128
SstI	GAGCTC	1 cut(s)	517
StuI	AGGCCT	1 cut(s)	803
StyD4I	CCNGG	2 cut(s)	357, 550
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	294, 467
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	2 cut(s)	18, 167
TatI	WGTACW	2 cut(s)	138, 490
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	5 cut(s)	77, 287, 771, 806, 936
Tru9I	TTAA	5 cut(s)	77, 287, 771, 806, 936
TseI	GCWGC	6 cut(s)	102, 227, 329, 374, 546, 701
TspDTI	ATGAA	2 cut(s)	83, 390
TspGWI	ACGGA	4 cut(s)	321, 525, 705, 824
VpaK11BI	GGWCC	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	287
XmiI	GTMKAC	3 cut(s)	55, 117, 601
XspI	CTAG	2 cut(s)	51, 128
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.