Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

7290455 .. 7293175

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGTCAAGGGTTGAGTTGCAGAGAGAGTGACCAACATGGGCTGTTCAGAGCCGTACAATTTGGGGAGCTGGACACTGTTGAAGATGTGTTAGAGAGAGACCCGACTCTCCTACGCCACTCCACCGTCTACGACCGCCACTCCGCTCTTCATATCGCCGCCGCCAACGGCCAGATCAAGATTCTTTCTATGCTGTTAGAACGATCTGTAAATCCAGATGCGTTAAATCGTCACAAGCAGACTCCATTGATGCTGGCTGCAATGCATGGCAAGATCTCCTGCGTGCAAAAGCTTCTTGAAGCAGGAGCAAATGTATTGATGTTTGATTCCCTCAACGGAAGAACTTGCTTGCATTATGCCGCTTACTATGGCCATTCCGGTTGCCTTCAAGCTATTGTTTCTGCTGCTCGTTCGAGTCCTGTTTCTGTTTCCTGGGGATTTGCCCGATTTGTGAATATTAGAGACGGTAAAGGAGCAACACCGTTGCATTTGGCAGCACGTCGAAGTAGGCCTGAATGTGTAGATATTCTGTTAGACAACGGGGCTCTTGTGTCTGCTTCAACTGGTAGATATGGCTTCCCTGGGAGCACTGCACTTCATTTGGCGGCTAGTGGGGGATCTCTGGATTGCATACGGGGATTGTTGGCATGGGGTGCAGATCGTGTTCAAAGAGATTCATCGGGGAGAATACCATATATAGTTGCTTTGAAACACAAACACGGAGCTTGTGCGGCCATGCTAAATCCTTCATCAGCTGAGCCTCTTGTGTGGCCAGCACCTTTAAAGTTTATTAATGAGCTTAATCAGGAAGCAAAAGCTCTACTAGAACAGGCCTTAATGGAGGCAAACAGGGAAAGGGAAAGGAACATCTTGAAAGGAACTGCTTACTCTCTTCCATCTCCGTTGCATTCTGATACAGGGATGGATGACAATATATCTGTGGAAAGCGATTTAGATCGATGCTGCATATGCTTTGAGCAGGTGTGTACAATTGAAGTCCAGAATTGCGGTCACCAAATGTGTGCACAATGCACTCTAGCTCTCTGCTGCCACAAGAAGCCAAATCCAACTACATTATGCCTTACGCCACCAGTTTGCCCATTCTGCCGAAGCCCAATTGCCCATTTGGTAGTTGCAAAGATCAAAAGTTGTGATGATGATCGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

390

Amino Acids

42.25

Weight (kDa)

7.52

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	970
Acc36I	ACCTGC	1 cut(s)	970
AccBSI	CCGCTC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	8 cut(s)	136, 144, 159, 162, 360, 605, 731, 1008
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	4 cut(s)	169, 370, 732, 770
AfaI	GTAC	2 cut(s)	57, 988
AgsI	TTSAA	8 cut(s)	83, 299, 389, 561, 668, 709, 874, 995
AjiI	CACGTC	1 cut(s)	500
AjnI	CCWGG	2 cut(s)	431, 580
AluBI	AGCT	8 cut(s)	70, 292, 392, 725, 755, 799, 818, 1040
AluI	AGCT	8 cut(s)	70, 292, 392, 725, 755, 799, 818, 1040
Alw21I	GWGCWC	2 cut(s)	590, 1027
Alw26I	GTCTC	2 cut(s)	93, 456
Alw44I	GTGCAC	1 cut(s)	1023
AlwI	GGATC	1 cut(s)	625
AoxI	GGCC	6 cut(s)	169, 370, 509, 732, 770, 831
ApaLI	GTGCAC	1 cut(s)	1023
ApeKI	GCWGC	5 cut(s)	257, 404, 494, 963, 1047
AseI	ATTAAT	1 cut(s)	792
AsuHPI	GGTGA	1 cut(s)	1004
BaeGI	GKGCMC	1 cut(s)	1027
BalI	TGGCCA	2 cut(s)	372, 772
BanII	GRGCYC	1 cut(s)	547
Bbv12I	GWGCWC	2 cut(s)	590, 1027
BbvI	GCAGC	5 cut(s)	244, 391, 506, 950, 1034
BccI	CCATC	2 cut(s)	904, 916
BceAI	ACGGC	2 cut(s)	38, 184
BciT130I	CCWGG	2 cut(s)	433, 582
BcoDI	GTCTC	2 cut(s)	93, 456
BfaI	CTAG	3 cut(s)	609, 824, 1037
BfuAI	ACCTGC	1 cut(s)	970
BglII	AGATCT	1 cut(s)	273
BlpI	GCTNAGC	1 cut(s)	756
Bme1390I	CCNGG	2 cut(s)	433, 582
BmgBI	CACGTC	1 cut(s)	500
BmrFI	CCNGG	2 cut(s)	433, 582
BmsI	GCATC	3 cut(s)	208, 240, 950
Bpu1102I	GCTNAGC	1 cut(s)	756
Bsa29I	ATCGAT	2 cut(s)	958, 1162
BsaBI	GATNNNNATC	2 cut(s)	954, 1158
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	432, 580, 581
BsaWI	WCCGGW	1 cut(s)	377
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 297, 327
Bse1I	ACTGG	2 cut(s)	568, 1091
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	2 cut(s)	954, 1158
BseBI	CCWGG	2 cut(s)	433, 582
BseCI	ATCGAT	2 cut(s)	958, 1162
BseDI	CCNNGG	3 cut(s)	432, 580, 581
BseGI	GGATG	2 cut(s)	927, 931
BseJI	GATNNNNATC	2 cut(s)	954, 1158
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	2 cut(s)	568, 1091
BseSI	GKGCMC	1 cut(s)	1027
BseXI	GCAGC	5 cut(s)	244, 391, 506, 950, 1034
BsgI	GTGCAG	2 cut(s)	576, 675
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	6 cut(s)	171, 372, 511, 734, 772, 833
BshVI	ATCGAT	2 cut(s)	958, 1162
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	590, 1027
BsiSI	CCGG	1 cut(s)	378
BsmAI	GTCTC	2 cut(s)	93, 456
BsmBI	CGTCTC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	6 cut(s)	171, 372, 511, 734, 772, 833
Bso31I	GGTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	547, 590, 1027
Bsp1407I	TGTACA	1 cut(s)	986
Bsp143I	GATC	9 cut(s)	174, 203, 273, 617, 658, 955, 1140, 1159, 1163
Bsp1720I	GCTNAGC	1 cut(s)	756
BspACI	CCGC	8 cut(s)	136, 144, 159, 162, 360, 605, 731, 1008
BspANI	GGCC	6 cut(s)	171, 372, 511, 734, 772, 833
BspCNI	CTCAG	1 cut(s)	748
BspDI	ATCGAT	2 cut(s)	958, 1162
BspHI	TCATGA	1 cut(s)	1166
BspMI	ACCTGC	1 cut(s)	970
BspPI	GGATC	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	986
BsrI	ACTGG	2 cut(s)	568, 1091
BssECI	CCNNGG	3 cut(s)	432, 580, 581
BssMI	GATC	9 cut(s)	174, 203, 273, 617, 658, 955, 1140, 1159, 1163
Bst2UI	CCWGG	2 cut(s)	433, 582
Bst4CI	ACNGT	4 cut(s)	79, 127, 467, 483
Bst6I	CTCTTC	2 cut(s)	153, 897
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	986
BstC8I	GCNNGC	4 cut(s)	255, 284, 350, 774
BstDEI	CTNAG	1 cut(s)	756
BstEII	GGTNACC	1 cut(s)	1010
BstF5I	GGATG	2 cut(s)	927, 931
BstKTI	GATC	9 cut(s)	177, 206, 276, 620, 661, 958, 1143, 1162, 1166
BstMAI	GTCTC	2 cut(s)	93, 456
BstMBI	GATC	9 cut(s)	174, 203, 273, 617, 658, 955, 1140, 1159, 1163
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	653, 731, 969, 1104
BstNI	CCWGG	2 cut(s)	433, 582
BstPI	GGTNACC	1 cut(s)	1010
BstSCI	CCNGG	2 cut(s)	431, 580
BstSLI	GKGCMC	1 cut(s)	1027
BstV1I	GCAGC	5 cut(s)	244, 391, 506, 950, 1034
BstX2I	RGATCY	2 cut(s)	273, 617
BstYI	RGATCY	2 cut(s)	273, 617
Bsu15I	ATCGAT	2 cut(s)	958, 1162
BsuRI	GGCC	6 cut(s)	171, 372, 511, 734, 772, 833
BsuTUI	ATCGAT	2 cut(s)	958, 1162
BtrI	CACGTC	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	927, 931
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	75, 588
BveI	ACCTGC	1 cut(s)	970
Cac8I	GCNNGC	4 cut(s)	255, 284, 350, 774
CciI	TCATGA	1 cut(s)	1166
ClaI	ATCGAT	2 cut(s)	958, 1162
Csp6I	GTAC	2 cut(s)	56, 987
CviAII	CATG	5 cut(s)	38, 266, 648, 736, 1167
CviQI	GTAC	2 cut(s)	56, 987
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	9 cut(s)	176, 205, 275, 619, 660, 957, 1142, 1161, 1165
DpnII	GATC	9 cut(s)	174, 203, 273, 617, 658, 955, 1140, 1159, 1163
DraI	TTTAAA	1 cut(s)	783
EaeI	YGGCCR	4 cut(s)	169, 370, 732, 770
Eam1104I	CTCTTC	2 cut(s)	153, 897
EarI	CTCTTC	2 cut(s)	153, 897
Eco147I	AGGCCT	2 cut(s)	511, 833
Eco24I	GRGCYC	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	1010
EcoO65I	GGTNACC	1 cut(s)	1010
EcoRII	CCWGG	2 cut(s)	431, 580
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	547
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	5 cut(s)	41, 269, 651, 739, 1170
FatI	CATG	5 cut(s)	37, 265, 647, 735, 1166
FauNDI	CATATG	1 cut(s)	968
FblI	GTMKAC	1 cut(s)	129
FokI	GGATG	2 cut(s)	934, 938
FriOI	GRGCYC	1 cut(s)	547
FspBI	CTAG	3 cut(s)	609, 824, 1037
HaeIII	GGCC	6 cut(s)	171, 372, 511, 734, 772, 833
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	5 cut(s)	41, 269, 651, 739, 1170
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	6 cut(s)	106, 181, 241, 326, 415, 674
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	1004
Hpy166II	GTNNAC	3 cut(s)	130, 987, 1025
Hpy188I	TCNGA	2 cut(s)	50, 913
Hpy188III	TCNNGA	8 cut(s)	178, 215, 296, 623, 806, 871, 1000, 1167
Hpy8I	GTNNAC	3 cut(s)	130, 987, 1025
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	2 cut(s)	395, 756
HpyCH4III	ACNGT	4 cut(s)	79, 127, 467, 483
HpyCH4IV	ACGT	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	653, 731, 969, 1104
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	5 cut(s)	41, 269, 651, 739, 1170
Kzo9I	GATC	9 cut(s)	174, 203, 273, 617, 658, 955, 1140, 1159, 1163
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	5 cut(s)	67, 305, 473, 585, 722
Lsp1109I	GCAGC	5 cut(s)	244, 391, 506, 950, 1034
LweI	GCATC	3 cut(s)	208, 240, 950
MaeI	CTAG	3 cut(s)	609, 824, 1037
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	3 cut(s)	29, 230, 1010
MalI	GATC	9 cut(s)	176, 205, 275, 619, 660, 957, 1142, 1161, 1165
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	9 cut(s)	174, 203, 273, 617, 658, 955, 1140, 1159, 1163
MboII	GAAGA	4 cut(s)	95, 140, 351, 884
MfeI	CAATTG	2 cut(s)	990, 1116
MflI	RGATCY	2 cut(s)	273, 617
MhlI	GDGCHC	3 cut(s)	547, 590, 1027
MlsI	TGGCCA	2 cut(s)	372, 772
MluCI	AATT	4 cut(s)	59, 990, 1003, 1116
MluNI	TGGCCA	2 cut(s)	372, 772
MlyI	GAGTC	3 cut(s)	100, 235, 424
MmeI	TCCRAC	1 cut(s)	1091
MnlI	CCTC	3 cut(s)	341, 771, 835
Mox20I	TGGCCA	2 cut(s)	372, 772
Mph1103I	ATGCAT	1 cut(s)	267
MscI	TGGCCA	2 cut(s)	372, 772
MseI	TTAA	5 cut(s)	224, 782, 792, 801, 836
Msp20I	TGGCCA	2 cut(s)	372, 772
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	433, 582
MunI	CAATTG	2 cut(s)	990, 1116
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	2 cut(s)	433, 582
MwoI	GCNNNNNNNGC	4 cut(s)	653, 731, 969, 1104
NdeI	CATATG	1 cut(s)	968
NdeII	GATC	9 cut(s)	174, 203, 273, 617, 658, 955, 1140, 1159, 1163
NlaIII	CATG	5 cut(s)	41, 269, 651, 739, 1170
NmuCI	GTSAC	3 cut(s)	29, 230, 1010
NsiI	ATGCAT	1 cut(s)	267
PagI	TCATGA	1 cut(s)	1166
PaqCI	CACCTGC	1 cut(s)	970
PasI	CCCWGGG	1 cut(s)	581
PceI	AGGCCT	2 cut(s)	511, 833
PciSI	GCTCTTC	1 cut(s)	153
PctI	GAATGC	1 cut(s)	907
PfeI	GAWTC	3 cut(s)	181, 326, 674
PleI	GAGTC	3 cut(s)	100, 235, 423
PpsI	GAGTC	3 cut(s)	100, 235, 423
PshBI	ATTAAT	1 cut(s)	792
Psp6I	CCWGG	2 cut(s)	431, 580
PspEI	GGTNACC	1 cut(s)	1010
PspGI	CCWGG	2 cut(s)	431, 580
PsuI	RGATCY	2 cut(s)	273, 617
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	2 cut(s)	57, 988
RsaNI	GTAC	2 cut(s)	56, 987
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	5 cut(s)	224, 782, 792, 801, 836
Sau3AI	GATC	9 cut(s)	174, 203, 273, 617, 658, 955, 1140, 1159, 1163
SchI	GAGTC	3 cut(s)	100, 235, 424
ScrFI	CCNGG	2 cut(s)	433, 582
SduI	GDGCHC	3 cut(s)	547, 590, 1027
SfaNI	GCATC	3 cut(s)	208, 240, 950
Sse9I	AATT	4 cut(s)	59, 990, 1003, 1116
SseBI	AGGCCT	2 cut(s)	511, 833
SsiI	CCGC	8 cut(s)	136, 144, 159, 162, 360, 605, 731, 1008
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	3 cut(s)	609, 824, 1037
StuI	AGGCCT	2 cut(s)	511, 833
StyD4I	CCNGG	2 cut(s)	431, 580
TaaI	ACNGT	4 cut(s)	79, 127, 467, 483
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	4 cut(s)	413, 502, 958, 1162
TasI	AATT	4 cut(s)	59, 990, 1003, 1116
TatI	WGTACW	1 cut(s)	986
TauI	GCSGC	5 cut(s)	161, 164, 362, 608, 734
TfiI	GAWTC	3 cut(s)	181, 326, 674
Tru1I	TTAA	5 cut(s)	224, 782, 792, 801, 836
Tru9I	TTAA	5 cut(s)	224, 782, 792, 801, 836
TscAI	CASTG	2 cut(s)	82, 595
TseFI	GTSAC	3 cut(s)	29, 230, 1010
TseI	GCWGC	5 cut(s)	257, 404, 494, 963, 1047
Tsp45I	GTSAC	3 cut(s)	29, 230, 1010
TspDTI	ATGAA	4 cut(s)	140, 587, 666, 738
TspGWI	ACGGA	3 cut(s)	351, 735, 891
TspRI	CASTG	2 cut(s)	82, 595
VneI	GTGCAC	1 cut(s)	1023
VspI	ATTAAT	1 cut(s)	792
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	3 cut(s)	609, 824, 1037
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.