Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

64193337 .. 64200172

Gene Structure 6836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAACTTGTTAGCTAGATATAGCTCTGCGCCAACGCGACGCCATTGGATTGGTGTAATAGATTTCTTTCGATACTTGAGATGTATGAATGATATGGGCTTGTTCTATCCCTATAGAGAGATGATGGATTCGGACCCATCACACACCAGAAACGCCGCCAACGCTGGCCTGCAAACCGGGGTTGTTGTTGTGGATGAGGATGGAAAACCAGAAGACAGAGTTGGAACTCCGCTTATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGGGGATTTGGGCGATTTGTGAATATTAGAGATGGTAGGGGAGCGACCCCGTTGCATTTAGCATCGAGGCGAAGTAGGCCTGAATGTGTACGTATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGCTGCCCAGGAAGCACTCCGCTGCATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGAGAATGCCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTACTCTCTTGCATCTCCATCACATTCTGATGTGCATTCTGATATAGGGATCGATGACAATCTTTCTGAGAAAATATGTTTGTGTATCATCAGATTGTGTGATATTCCTATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

309

Amino Acids

33.59

Weight (kDa)

7.58

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	93 - 196	4.7e-15	Ankyrin repeats (3 copies)
Ank_4	PF13637	93 - 154	1.1e-06	Ankyrin repeats (many copies)
Ank	PF00023	134 - 163	2.7e-06	Ankyrin repeat
Ank_4	PF13637	138 - 188	2e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	559
AccII	CGCG	2 cut(s)	37, 591
AciI	CCGC	7 cut(s)	156, 230, 330, 495, 521, 533, 810
AclWI	GGATC	3 cut(s)	553, 613, 869
AcoI	YGGCCR	2 cut(s)	298, 698
AcyI	GRCGYC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	450
AgsI	TTSAA	4 cut(s)	489, 637, 712, 802
AjnI	CCWGG	2 cut(s)	315, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	9 cut(s)	14, 24, 353, 473, 653, 662, 683, 727, 746
AluI	AGCT	9 cut(s)	14, 24, 353, 473, 653, 662, 683, 727, 746
Alw21I	GWGCWC	1 cut(s)	475
AlwI	GGATC	3 cut(s)	553, 613, 869
AoxI	GGCC	6 cut(s)	166, 298, 318, 437, 698, 759
ApeKI	GCWGC	6 cut(s)	242, 287, 332, 504, 523, 659
AspLEI	GCGC	2 cut(s)	31, 593
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	696
AvaII	GGWCC	1 cut(s)	133
BalI	TGGCCA	2 cut(s)	300, 700
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	6 cut(s)	229, 274, 319, 491, 510, 671
BccI	CCATC	7 cut(s)	118, 145, 194, 386, 596, 709, 838
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	2 cut(s)	317, 510
BcnI	CCSGG	1 cut(s)	178
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	112
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	8 cut(s)	156, 243, 288, 333, 505, 524, 534, 660
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	8 cut(s)	157, 244, 289, 334, 506, 525, 535, 661
Bme1390I	CCNGG	3 cut(s)	178, 317, 510
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	3 cut(s)	178, 317, 510
BmsI	GCATC	2 cut(s)	431, 833
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	864
BsaAI	YACGTR	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	177, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	2 cut(s)	317, 510
BseCI	ATCGAT	1 cut(s)	864
BseDI	CCNNGG	2 cut(s)	177, 508
BseGI	GGATG	2 cut(s)	199, 205
BseJI	GATNNNNATC	1 cut(s)	870
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	675, 870
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	6 cut(s)	229, 274, 319, 491, 510, 671
BsgI	GTGCAG	2 cut(s)	603, 678
Bsh1236I	CGCG	2 cut(s)	37, 591
BshFI	GGCC	6 cut(s)	168, 300, 320, 439, 700, 761
BshVI	ATCGAT	1 cut(s)	864
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	177
BsmI	GAATGC	2 cut(s)	621, 847
BsnI	GGCC	6 cut(s)	168, 300, 320, 439, 700, 761
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	5 cut(s)	258, 545, 586, 605, 861
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	7 cut(s)	156, 230, 330, 495, 521, 533, 810
BspANI	GGCC	6 cut(s)	168, 300, 320, 439, 700, 761
BspCNI	CTCAG	2 cut(s)	676, 871
BspDI	ATCGAT	1 cut(s)	864
BspFNI	CGCG	2 cut(s)	37, 591
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	3 cut(s)	553, 613, 869
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	177, 508
BssMI	GATC	5 cut(s)	258, 545, 586, 605, 861
BssNAI	GTATAC	1 cut(s)	560
BssNI	GRCGYC	1 cut(s)	40
Bst1107I	GTATAC	1 cut(s)	560
Bst2UI	CCWGG	2 cut(s)	317, 510
BstACI	GRCGYC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	166, 170
BstDEI	CTNAG	2 cut(s)	684, 879
BstF5I	GGATG	2 cut(s)	199, 205
BstFNI	CGCG	2 cut(s)	37, 591
BstHHI	GCGC	2 cut(s)	31, 593
BstKTI	GATC	5 cut(s)	261, 548, 589, 608, 864
BstMBI	GATC	5 cut(s)	258, 545, 586, 605, 861
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 436, 501, 513, 581, 590, 659
BstNI	CCWGG	2 cut(s)	317, 510
BstSCI	CCNGG	3 cut(s)	176, 315, 508
BstSFI	CTRYAG	1 cut(s)	112
BstSNI	TACGTA	1 cut(s)	452
BstUI	CGCG	2 cut(s)	37, 591
BstV1I	GCAGC	6 cut(s)	229, 274, 319, 491, 510, 671
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	258, 545
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstYI	RGATCY	2 cut(s)	258, 545
BstZ17I	GTATAC	1 cut(s)	560
Bsu15I	ATCGAT	1 cut(s)	864
BsuRI	GGCC	6 cut(s)	168, 300, 320, 439, 700, 761
BsuTUI	ATCGAT	1 cut(s)	864
BtsCI	GGATG	2 cut(s)	199, 205
Cac8I	GCNNGC	2 cut(s)	166, 170
CfoI	GCGC	2 cut(s)	31, 593
Cfr13I	GGNCC	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	864
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	7 cut(s)	251, 264, 302, 347, 360, 576, 647
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	2 cut(s)	684, 879
DpnI	GATC	5 cut(s)	260, 547, 588, 607, 863
DpnII	GATC	5 cut(s)	258, 545, 586, 605, 861
EaeI	YGGCCR	2 cut(s)	298, 698
EciI	GGCGGA	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	473
Eco105I	TACGTA	1 cut(s)	452
Eco147I	AGGCCT	2 cut(s)	439, 761
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	315, 508
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	475
FaeI	CATG	7 cut(s)	254, 267, 305, 350, 363, 579, 650
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FatI	CATG	7 cut(s)	250, 263, 301, 346, 359, 575, 646
FblI	GTMKAC	1 cut(s)	559
Fnu4HI	GCNGC	8 cut(s)	156, 243, 288, 333, 505, 524, 534, 660
FokI	GGATG	2 cut(s)	206, 212
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	8 cut(s)	156, 243, 288, 333, 505, 524, 534, 660
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	2 cut(s)	30, 592
GluI	GCNGC	8 cut(s)	156, 243, 288, 333, 505, 524, 534, 660
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	6 cut(s)	168, 300, 320, 439, 700, 761
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	2 cut(s)	31, 593
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	7 cut(s)	254, 267, 305, 350, 363, 579, 650
Hin6I	GCGC	2 cut(s)	29, 591
HinP1I	GCGC	2 cut(s)	29, 591
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	696
Hpy166II	GTNNAC	2 cut(s)	449, 560
Hpy188I	TCNGA	5 cut(s)	133, 841, 853, 880, 905
Hpy188III	TCNNGA	2 cut(s)	551, 799
Hpy8I	GTNNAC	2 cut(s)	449, 560
Hpy99I	CGWCG	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 436, 501, 513, 581, 590, 659
HpyF3I	CTNAG	2 cut(s)	684, 879
HpySE526I	ACGT	1 cut(s)	451
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	7 cut(s)	254, 267, 305, 350, 363, 579, 650
HspAI	GCGC	2 cut(s)	29, 591
Kzo9I	GATC	5 cut(s)	258, 545, 586, 605, 861
LmnI	GCTCC	3 cut(s)	401, 470, 650
Lsp1109I	GCAGC	6 cut(s)	229, 274, 319, 491, 510, 671
LweI	GCATC	2 cut(s)	431, 833
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	2 cut(s)	268, 812
MalI	GATC	5 cut(s)	260, 547, 588, 607, 863
MboI	GATC	5 cut(s)	258, 545, 586, 605, 861
MboII	GAAGA	2 cut(s)	224, 802
MflI	RGATCY	2 cut(s)	258, 545
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	2 cut(s)	300, 700
MluNI	TGGCCA	2 cut(s)	300, 700
MmeI	TCCRAC	1 cut(s)	202
Mox20I	TGGCCA	2 cut(s)	300, 700
Mph1103I	ATGCAT	1 cut(s)	252
MscI	TGGCCA	2 cut(s)	300, 700
MseI	TTAA	2 cut(s)	729, 764
MslI	CAYNNNNRTG	2 cut(s)	645, 840
Msp20I	TGGCCA	2 cut(s)	300, 700
MspA1I	CMGCKG	3 cut(s)	332, 523, 683
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	178, 317, 510
Mva1269I	GAATGC	2 cut(s)	621, 847
MvaI	CCWGG	2 cut(s)	317, 510
MvnI	CGCG	2 cut(s)	37, 591
MwoI	GCNNNNNNNGC	7 cut(s)	161, 436, 501, 513, 581, 590, 659
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	5 cut(s)	258, 545, 586, 605, 861
NlaIII	CATG	7 cut(s)	254, 267, 305, 350, 363, 579, 650
NlaIV	GGNNCC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	252
PceI	AGGCCT	2 cut(s)	439, 761
PctI	GAATGC	2 cut(s)	621, 847
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	8 cut(s)	157, 244, 289, 334, 506, 525, 535, 661
Ppu21I	YACGTR	1 cut(s)	452
Psp124BI	GAGCTC	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	315, 508
PspGI	CCWGG	2 cut(s)	315, 508
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	258, 545
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	2 cut(s)	645, 840
SacI	GAGCTC	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	729, 764
SatI	GCNGC	8 cut(s)	156, 243, 288, 333, 505, 524, 534, 660
Sau3AI	GATC	5 cut(s)	258, 545, 586, 605, 861
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	3 cut(s)	178, 317, 510
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	2 cut(s)	431, 833
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	645, 840
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SnaBI	TACGTA	1 cut(s)	452
SseBI	AGGCCT	2 cut(s)	439, 761
SsiI	CCGC	7 cut(s)	156, 230, 330, 495, 521, 533, 810
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	475
StuI	AGGCCT	2 cut(s)	439, 761
StyD4I	CCNGG	3 cut(s)	176, 315, 508
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	70, 425, 864
TauI	GCSGC	2 cut(s)	158, 536
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	729, 764
Tru9I	TTAA	2 cut(s)	729, 764
TseI	GCWGC	6 cut(s)	242, 287, 332, 504, 523, 659
TspDTI	ATGAA	3 cut(s)	17, 101, 348
TspGWI	ACGGA	3 cut(s)	483, 663, 782
VpaK11BI	GGWCC	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	559
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.