Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Forward (+)

52801248 .. 52805798

Gene Structure 4551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAATCCTATGATGAGATTTTGTTCCCTGAGCCTTCAGAGAGTTTTTTAGCTCGTGTCCAGAATCACCCTGCTAAAGCCTCCCCCAAATTACCTGCTGGTTTGACTCTGCCTTCTCCTATGCCAGTTGAAGATCTAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCCCTGACCCAGTGGTTCATGAATGTTTCAGAAGCTAATGAACTTCTACAACTGGCTGTGGCTCATCAGCAGATGAGCATTTCTCTCTCTGAAATTTCTGGATATATATACAGGAGAATGGCATATATAGGTGCTTTGAAACACAAACATGGAGCTTGTGCAGCTATGCTAAATCCGTCATCAGCTGAGCCTCTGGTGTGGCCATCACCTTTGAAGTTTATTAGTGAGCTTAATGAGGAGGCAAAAGCTTTGTTAGAACAGGCCTTAACGGAGGCAAACAAGGAGAGGGAGAAGAATATCTTGAAAGGAAGCGGTTTCTCTCTTGCATCTCCATCGCATTCTGATGTGCATTCTGATATAGGGATGGATGACAATCTTTCTGAGACCTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

188

Amino Acids

20.83

Weight (kDa)

5.38

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AciI	CCGC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	21
AgsI	TTSAA	4 cut(s)	131, 310, 385, 475
AluBI	AGCT	7 cut(s)	53, 206, 326, 335, 356, 400, 419
AluI	AGCT	7 cut(s)	53, 206, 326, 335, 356, 400, 419
Alw26I	GTCTC	1 cut(s)	548
AoxI	GGCC	2 cut(s)	371, 432
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	264
AsuHPI	GGTGA	3 cut(s)	59, 167, 369
BalI	TGGCCA	1 cut(s)	373
BauI	CACGAG	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	3 cut(s)	382, 511, 529
BcgI	CGANNNNNNTGC	2 cut(s)	486, 520
BcoDI	GTCTC	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	1 cut(s)	333
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	334
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	506
BmuI	ACTGGG	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	548
Bse1I	ACTGG	3 cut(s)	125, 181, 228
Bse8I	GATNNNNATC	1 cut(s)	543
BseGI	GGATG	3 cut(s)	169, 540, 544
BseJI	GATNNNNATC	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	21, 348, 543
BseNI	ACTGG	3 cut(s)	125, 181, 228
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	373, 434
BsmAI	GTCTC	1 cut(s)	548
BsmI	GAATGC	2 cut(s)	508, 520
BsnI	GGCC	2 cut(s)	373, 434
Bso31I	GGTCTC	1 cut(s)	548
Bsp143I	GATC	2 cut(s)	133, 166
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	2 cut(s)	373, 434
BspCNI	CTCAG	3 cut(s)	22, 349, 544
BspHI	TCATGA	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	3 cut(s)	125, 181, 228
BssMI	GATC	2 cut(s)	133, 166
BssSI	CACGAG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	54
BstDEI	CTNAG	4 cut(s)	30, 137, 357, 552
BstF5I	GGATG	3 cut(s)	169, 540, 544
BstKTI	GATC	2 cut(s)	136, 169
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	2 cut(s)	133, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	373, 434
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	169, 540, 544
BtsIMutI	CAGTG	1 cut(s)	188
BveI	ACCTGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	189
CviAII	CATG	2 cut(s)	190, 320
DdeI	CTNAG	4 cut(s)	30, 137, 357, 552
DpnI	GATC	2 cut(s)	135, 168
DpnII	GATC	2 cut(s)	133, 166
EaeI	YGGCCR	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	21
FaeI	CATG	2 cut(s)	193, 323
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FatI	CATG	2 cut(s)	189, 319
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	3 cut(s)	156, 547, 551
Fsp4HI	GCNGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	373, 434
Hin1II	CATG	2 cut(s)	193, 323
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	3 cut(s)	5, 64, 106
HphI	GGTGA	3 cut(s)	59, 167, 369
Hpy188I	TCNGA	6 cut(s)	40, 202, 262, 514, 526, 553
Hpy188III	TCNNGA	4 cut(s)	61, 190, 270, 472
HpyAV	CCTTC	2 cut(s)	45, 123
HpyCH4V	TGCA	3 cut(s)	332, 497, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	4 cut(s)	30, 137, 357, 552
Hsp92II	CATG	2 cut(s)	193, 323
Kzo9I	GATC	2 cut(s)	133, 166
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	135, 168
MboI	GATC	2 cut(s)	133, 166
MboII	GAAGA	2 cut(s)	143, 475
MflI	RGATCY	1 cut(s)	133
MlsI	TGGCCA	1 cut(s)	373
MluCI	AATT	2 cut(s)	89, 264
MluNI	TGGCCA	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	7 cut(s)	91, 146, 372, 400, 403, 436, 450
Mox20I	TGGCCA	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	373
MseI	TTAA	2 cut(s)	402, 437
MslI	CAYNNNNRTG	2 cut(s)	318, 513
Msp20I	TGGCCA	1 cut(s)	373
MspA1I	CMGCKG	1 cut(s)	356
Mva1269I	GAATGC	2 cut(s)	508, 520
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	2 cut(s)	133, 166
NlaIII	CATG	2 cut(s)	193, 323
NmuCI	GTSAC	1 cut(s)	155
PagI	TCATGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	434
PctI	GAATGC	2 cut(s)	508, 520
PfeI	GAWTC	2 cut(s)	5, 64
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	356
RseI	CAYNNNNRTG	2 cut(s)	318, 513
SaqAI	TTAA	2 cut(s)	402, 437
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	133, 166
SchI	GAGTC	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	506
SmiMI	CAYNNNNRTG	2 cut(s)	318, 513
Sse9I	AATT	2 cut(s)	89, 264
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	434
TasI	AATT	2 cut(s)	89, 264
TfiI	GAWTC	2 cut(s)	5, 64
Tru1I	TTAA	2 cut(s)	402, 437
Tru9I	TTAA	2 cut(s)	402, 437
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	178, 206, 225
TspGWI	ACGGA	2 cut(s)	336, 455
TspRI	CASTG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.