Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

48258830 .. 48262286

Gene Structure 3457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0363400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATTCAAGTTAGATCAGTAGAAAAGCTTAGAGAGGTTATCAAATCGATCATGACTTCAGTCATCAACGTCGACGGCCACGATCACCTACCCTTGGATCTTTGCAGTTCATCCACCCATCAACACCAGGGGGAAATGGAAAGCAAAGGAGATAATTGTGAAAAGGGGAACCATGGTGGGGTGTGTGCAATATGTTTGGATGAGATTATGCTTCAGGAAACGGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGCAACTTGCATTCTTCGTTGGGTGACATACAGCAAATCACCCACCTGCCCTCAGTGCAAACATCCATTCGAGTTCCTGAATGTCCATCGGTCACTTGATGGCAGCATACATGATTTTATGTTCGAGGAGAGTGTGTGTCTACTGCTTAGAGCTACATGGTTTGAGCCTCTAGTTGTGGAGGATCGCGAAGATGTGTATGCATATGATGATTCTGAAGATTATTATCCCTACGAGGATGAAGAGGATGACCTAGATGAAGCTTACTTCAGCAGTTCATCGAGTATCCGTATTGGTAATCGAAGGTGGGGAGATAATGGGTATGTGAGCGCTGGACGGCAAGAAGCAAGGCCTGTTCACAGATCAAATATCCAGGAAGCAGGTGCTAGTTCTTCTCGTGAACCTAGAAAGAAAGAGGCTTCAATGGATAAAACTGGGAGACGGGCAAAGAGGGCACTTAAGCGAGAAGCCGCGGATAAGGCTGCTGCAGCAAAACATGAGCTGCATTTGGCAAGGTTGGGCCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

260

Amino Acids

29.45

Weight (kDa)

5.76

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	62 - 105	6.8e-10	Ring finger domain
zf-C3HC4_2	PF13923	62 - 104	5.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	62 - 104	3.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	308, 623
Acc36I	ACCTGC	2 cut(s)	308, 623
AccI	GTMKAC	2 cut(s)	72, 394
AccII	CGCG	2 cut(s)	441, 725
AciI	CCGC	2 cut(s)	723, 725
AclWI	GGATC	2 cut(s)	105, 444
AcoI	YGGCCR	1 cut(s)	76
AcuI	CTGAAG	4 cut(s)	42, 197, 489, 505
AfeI	AGCGCT	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	94, 178
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	2 cut(s)	8, 675
AjnI	CCWGG	2 cut(s)	126, 624
AluBI	AGCT	4 cut(s)	28, 407, 515, 754
AluI	AGCT	4 cut(s)	28, 407, 515, 754
Alw26I	GTCTC	1 cut(s)	685
AlwI	GGATC	2 cut(s)	105, 444
Aor51HI	AGCGCT	1 cut(s)	583
AoxI	GGCC	3 cut(s)	76, 602, 772
ApeKI	GCWGC	5 cut(s)	357, 734, 737, 740, 754
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	3 cut(s)	77, 285, 289
BaeGI	GKGCMC	1 cut(s)	709
BauI	CACGAG	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	369, 721, 724, 741, 752
BccI	CCATC	3 cut(s)	126, 347, 348
BceAI	ACGGC	3 cut(s)	91, 237, 605
BciT130I	CCWGG	2 cut(s)	128, 626
BciVI	GTATCC	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	4 cut(s)	425, 506, 639, 657
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	710
BfuAI	ACCTGC	2 cut(s)	308, 623
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	6 cut(s)	358, 723, 735, 738, 741, 755
BlsI	GCNGC	6 cut(s)	359, 724, 736, 739, 742, 756
Bme1390I	CCNGG	2 cut(s)	128, 626
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	128, 626
BmrI	ACTGGG	1 cut(s)	696
BmuI	ACTGGG	1 cut(s)	696
BoxI	GACNNNNGTC	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	4 cut(s)	93, 127, 172, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 178
Bse1I	ACTGG	1 cut(s)	691
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	128, 626
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	4 cut(s)	93, 127, 172, 723
BseGI	GGATG	5 cut(s)	110, 205, 316, 496, 505
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	94, 178
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	5 cut(s)	369, 721, 724, 741, 752
Bsh1236I	CGCG	2 cut(s)	441, 725
BshFI	GGCC	3 cut(s)	78, 604, 774
BshVI	ATCGAT	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	775
BslI	CCNNNNNNNGG	2 cut(s)	94, 178
BsmAI	GTCTC	1 cut(s)	685
BsmBI	CGTCTC	1 cut(s)	685
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	3 cut(s)	78, 604, 774
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	6 cut(s)	14, 48, 82, 97, 436, 614
Bsp19I	CCATGG	1 cut(s)	172
Bsp68I	TCGCGA	1 cut(s)	441
BspACI	CCGC	2 cut(s)	723, 725
BspANI	GGCC	3 cut(s)	78, 604, 774
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	47
BspFNI	CGCG	2 cut(s)	441, 725
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	742
BspMI	ACCTGC	2 cut(s)	308, 623
BspPI	GGATC	2 cut(s)	105, 444
BspTI	CTTAAG	1 cut(s)	710
BsrI	ACTGG	1 cut(s)	691
BssECI	CCNNGG	4 cut(s)	93, 127, 172, 723
BssMI	GATC	6 cut(s)	14, 48, 82, 97, 436, 614
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	2 cut(s)	93, 172
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	128, 626
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	489
BstAFI	CTTAAG	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	242, 246
BstDEI	CTNAG	3 cut(s)	29, 306, 401
BstDSI	CCRYGG	2 cut(s)	172, 723
BstF5I	GGATG	5 cut(s)	110, 205, 316, 496, 505
BstFNI	CGCG	2 cut(s)	441, 725
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	6 cut(s)	17, 51, 85, 100, 439, 617
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	6 cut(s)	14, 48, 82, 97, 436, 614
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 309, 704, 731, 740
BstNI	CCWGG	2 cut(s)	128, 626
BstNSI	RCATGY	1 cut(s)	248
BstPAI	GACNNNNGTC	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	126, 624
BstSFI	CTRYAG	1 cut(s)	738
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	2 cut(s)	441, 725
BstV1I	GCAGC	5 cut(s)	369, 721, 724, 741, 752
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	78, 604, 774
BsuTUI	ATCGAT	1 cut(s)	47
BtgI	CCRYGG	2 cut(s)	172, 723
BtsCI	GGATG	5 cut(s)	110, 205, 316, 496, 505
BtsIMutI	CAGTG	1 cut(s)	314
BtuMI	TCGCGA	1 cut(s)	441
BveI	ACCTGC	2 cut(s)	308, 623
Cac8I	GCNNGC	2 cut(s)	242, 246
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	772
Cfr42I	CCGCGG	1 cut(s)	726
ClaI	ATCGAT	1 cut(s)	47
CviAII	CATG	6 cut(s)	52, 173, 245, 365, 411, 749
DdeI	CTNAG	3 cut(s)	29, 306, 401
DpnI	GATC	6 cut(s)	16, 50, 84, 99, 438, 616
DpnII	GATC	6 cut(s)	14, 48, 82, 97, 436, 614
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	93, 172
Eco147I	AGGCCT	1 cut(s)	604
Eco47III	AGCGCT	1 cut(s)	583
Eco57I	CTGAAG	4 cut(s)	42, 197, 489, 505
EcoRII	CCWGG	2 cut(s)	126, 624
EcoT14I	CCWWGG	2 cut(s)	93, 172
EcoT22I	ATGCAT	1 cut(s)	457
ErhI	CCWWGG	2 cut(s)	93, 172
Esp3I	CGTCTC	1 cut(s)	685
FaeI	CATG	6 cut(s)	55, 176, 248, 368, 414, 752
FatI	CATG	6 cut(s)	51, 172, 244, 364, 410, 748
FauNDI	CATATG	1 cut(s)	457
FblI	GTMKAC	2 cut(s)	72, 394
Fnu4HI	GCNGC	6 cut(s)	358, 723, 735, 738, 741, 755
FokI	GGATG	5 cut(s)	97, 212, 303, 503, 512
Fsp4HI	GCNGC	6 cut(s)	358, 723, 735, 738, 741, 755
FspBI	CTAG	4 cut(s)	425, 506, 639, 657
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	6 cut(s)	358, 723, 735, 738, 741, 755
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	78, 604, 774
HapII	CCGG	1 cut(s)	775
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	6 cut(s)	55, 176, 248, 368, 414, 752
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	2 cut(s)	26, 513
HinfI	GANTC	2 cut(s)	4, 464
HpaII	CCGG	1 cut(s)	775
HphI	GGTGA	3 cut(s)	77, 285, 289
Hpy166II	GTNNAC	4 cut(s)	73, 395, 610, 653
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	5 cut(s)	52, 215, 331, 440, 650
Hpy8I	GTNNAC	4 cut(s)	73, 395, 610, 653
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	1 cut(s)	549
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	8 cut(s)	105, 188, 257, 264, 312, 455, 740, 757
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 309, 704, 731, 740
HpyF3I	CTNAG	3 cut(s)	29, 306, 401
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	55, 176, 248, 368, 414, 752
HspAI	GCGC	1 cut(s)	582
KspI	CCGCGG	1 cut(s)	726
Kzo9I	GATC	6 cut(s)	14, 48, 82, 97, 436, 614
Lsp1109I	GCAGC	5 cut(s)	369, 721, 724, 741, 752
MaeI	CTAG	4 cut(s)	425, 506, 639, 657
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	277, 345
MalI	GATC	6 cut(s)	16, 50, 84, 99, 438, 616
MboI	GATC	6 cut(s)	14, 48, 82, 97, 436, 614
MboII	GAAGA	5 cut(s)	260, 455, 482, 506, 636
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	1 cut(s)	154
MnlI	CCTC	9 cut(s)	28, 315, 373, 427, 432, 481, 490, 661, 696
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	725
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	1 cut(s)	775
MspR9I	CCNGG	2 cut(s)	128, 626
Mva1269I	GAATGC	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	128, 626
MvnI	CGCG	2 cut(s)	441, 725
MwoI	GCNNNNNNNGC	5 cut(s)	254, 309, 704, 731, 740
NcoI	CCATGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	6 cut(s)	14, 48, 82, 97, 436, 614
NlaIII	CATG	6 cut(s)	55, 176, 248, 368, 414, 752
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	277, 345
NruI	TCGCGA	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	51
PaqCI	CACCTGC	2 cut(s)	308, 623
PceI	AGGCCT	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	4, 464
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	6 cut(s)	359, 724, 736, 739, 742, 756
PshAI	GACNNNNGTC	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	126, 624
PspGI	CCWGG	2 cut(s)	126, 624
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	772
PstI	CTGCAG	1 cut(s)	742
PsuI	RGATCY	1 cut(s)	97
RruI	TCGCGA	1 cut(s)	441
SacII	CCGCGG	1 cut(s)	726
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	6 cut(s)	358, 723, 735, 738, 741, 755
Sau3AI	GATC	6 cut(s)	14, 48, 82, 97, 436, 614
Sau96I	GGNCC	1 cut(s)	772
ScrFI	CCNGG	2 cut(s)	128, 626
SduI	GDGCHC	1 cut(s)	709
SfcI	CTRYAG	1 cut(s)	738
Sfr303I	CCGCGG	1 cut(s)	726
SgrBI	CCGCGG	1 cut(s)	726
SgrDI	CGTCGACG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	1 cut(s)	154
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	2 cut(s)	723, 725
SspMI	CTAG	4 cut(s)	425, 506, 639, 657
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	126, 624
StyI	CCWWGG	2 cut(s)	93, 172
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	6 cut(s)	47, 72, 324, 378, 533, 553
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	154
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	4, 464
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	277, 345
TseI	GCWGC	5 cut(s)	357, 734, 737, 740, 754
Tsp45I	GTSAC	2 cut(s)	277, 345
TspDTI	ATGAA	4 cut(s)	99, 507, 519, 525
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	710
XceI	RCATGY	1 cut(s)	248
XmiI	GTMKAC	2 cut(s)	72, 394
XspI	CTAG	4 cut(s)	425, 506, 639, 657
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.