Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

5386189 .. 5390178

Gene Structure 3990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G079100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGGTCAGGGGCTGAGTTGCAGACAGAGTGATGAACATGGGCTCTTCCGTGCCGTGCAGTTTGGGGAATTGGACACCGTGGAAGCTTTGCTAGAGAGAGAGCCAACTCTCTTGCGCCACTCGACTGTCTATGACCGCCACTCTGCTCTTCATATTGCTGCTGCTAATGGCCAGATCGAGATTCTTTCTATGCTCTTAGAACGATCTGTTAATCCAGATGCGTTGAATCGGCACAAGCAGACTCCACTTATGTTGGCTGCAATGCATGGCAAGATCTCGTGCGTAGAAAAGCTTCTTGAAGCCGGAGCAAATGTCTTAATGTTTGATTCCCTTCATGGACGAACCTGCTTGCATTATGCTGCTTACTATGGTCATTCTGATTGCCTTCAAGCTATTATTTCTTCTGCTCATTCAAGTCCTGTTGCTGTTTCATGGGGATTTTCACGATTTGTGAATATTAGAGATGGCCGGGGAGCAACACCATTGCATTTGGCAGCCCGTCGAAGTAGGCCTGAATGTGTACATATTCTGTTAGACAACGGAGCTCTTGTTTGTGCTGCAACTGGTGGATATTGCTGTCCTGCGAGCACTCCACTTCATTTGGCTGCTAGAGGGGGATCTCTGGATTGCATACGTGCATTGTTGGCATGGGGTGCAGATCGTATTCAAAGAGATTCATCCGGGAGAATACCATATATAGTTGCTTTGAAACACAAACATGGAGCTTGTGCAGCAATGCTAAATCCTTCATCAGCTGAGCCTCTTGTGTGGCCAGCACCTCTGAAGTTTATTAGTGAGCTTAATCAGGAGGCAAAAGCTCTGCTAGAACAGGCCTTAATGGAGGCAAACAGGGAGAGGGAGAAGAACATCTTGAAAGGAACTGCTTATTCTCTTCCATCTCCATCACACTCTGATGTTGGGATGGATGACAATCTGTCTGTGGAAAGCGATTTAGATCTATGCTGCATATGCTTTGAGCAGGTGTGCACAATTGAAGTCCAGAATTGCGGCCACCAAATGTGTGCACAATGCACTCTAGCTCTCTGCTGCCATAACAAGCCTAACCCAACAACATTGTGTGTAACACCACCAGTTTGCCCGTTCTGTCGAAGCACCATTGGCCATCTGGTAGTTGCAAAGATTAAAACTTATGATGATGCTGATCATGACACCGGAGATAACAATTCCTCCAAGCTAAGAAAGGCAAGGAGGTCCCGAAACTTCAGTGAGGGCAGCAGCAGTTTCAAGGGGTTATCGGCATTGGGTTCTTTTGGAAAGATGGGTGTCCGTGGCTCAGGAAGGATTCTTGCTGAGAATGAATGGGTTGACAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

446

Amino Acids

48.32

Weight (kDa)

7.25

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	970
Acc36I	ACCTGC	2 cut(s)	353, 970
AciI	CCGC	2 cut(s)	136, 1008
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	5 cut(s)	169, 466, 770, 1009, 1120
AcuI	CTGAAG	2 cut(s)	803, 1207
AfaI	GTAC	1 cut(s)	522
AgsI	TTSAA	9 cut(s)	226, 299, 389, 414, 668, 709, 874, 995, 1246
AhdI	GACNNNNNGTC	1 cut(s)	934
Alw21I	GWGCWC	4 cut(s)	547, 590, 989, 1027
Alw44I	GTGCAC	2 cut(s)	985, 1023
AlwI	GGATC	1 cut(s)	625
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	7 cut(s)	169, 466, 509, 770, 831, 1009, 1120
ApaLI	GTGCAC	2 cut(s)	985, 1023
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	1212
AsuC2I	CCSGG	2 cut(s)	470, 682
AvaII	GGWCC	1 cut(s)	1212
BaeGI	GKGCMC	2 cut(s)	989, 1027
BalI	TGGCCA	3 cut(s)	171, 772, 1122
BanII	GRGCYC	2 cut(s)	45, 547
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BauI	CACGAG	1 cut(s)	277
Bbv12I	GWGCWC	4 cut(s)	547, 590, 989, 1027
BccI	CCATC	6 cut(s)	458, 904, 910, 916, 1131, 1273
BceAI	ACGGC	1 cut(s)	38
BclI	TGATCA	1 cut(s)	1162
BcnI	CCSGG	2 cut(s)	470, 682
BfaI	CTAG	4 cut(s)	92, 609, 824, 1037
BfuAI	ACCTGC	2 cut(s)	353, 970
BglII	AGATCT	2 cut(s)	273, 955
BlpI	GCTNAGC	1 cut(s)	756
Bme1390I	CCNGG	2 cut(s)	470, 682
Bme18I	GGWCC	1 cut(s)	1212
BmeRI	GACNNNNNGTC	1 cut(s)	934
BmgT120I	GGNCC	1 cut(s)	1212
BmiI	GGNNCC	1 cut(s)	1214
BmrFI	CCNGG	2 cut(s)	470, 682
BmsI	GCATC	2 cut(s)	208, 1147
Bpu10I	CCTNAGC	1 cut(s)	1294
Bpu1102I	GCTNAGC	1 cut(s)	756
BpuMI	CCSGG	2 cut(s)	470, 682
BsaAI	YACGTR	1 cut(s)	635
BsaBI	GATNNNNATC	3 cut(s)	930, 954, 1161
BsaJI	CCNNGG	3 cut(s)	78, 469, 1288
BsaWI	WCCGGW	1 cut(s)	1172
BsaXI	ACNNNNNCTCC	6 cut(s)	297, 327, 534, 564, 1172, 1202
Bse1I	ACTGG	2 cut(s)	568, 1091
Bse3DI	GCAATG	3 cut(s)	267, 482, 741
Bse8I	GATNNNNATC	3 cut(s)	930, 954, 1161
BseDI	CCNNGG	3 cut(s)	78, 469, 1288
BseGI	GGATG	3 cut(s)	677, 927, 931
BseJI	GATNNNNATC	3 cut(s)	930, 954, 1161
BseMI	GCAATG	3 cut(s)	267, 482, 741
BseMII	CTCAG	4 cut(s)	5, 747, 1302, 1308
BseNI	ACTGG	2 cut(s)	568, 1091
BseSI	GKGCMC	2 cut(s)	989, 1027
BsgI	GTGCAG	3 cut(s)	77, 675, 750
BshFI	GGCC	7 cut(s)	171, 468, 511, 772, 833, 1011, 1122
BsiHKAI	GWGCWC	4 cut(s)	547, 590, 989, 1027
BsiSI	CCGG	4 cut(s)	303, 469, 681, 1173
BslFI	GGGAC	1 cut(s)	1198
BsmFI	GGGAC	1 cut(s)	1198
BsnI	GGCC	7 cut(s)	171, 468, 511, 772, 833, 1011, 1122
Bsp1286I	GDGCHC	5 cut(s)	45, 547, 590, 989, 1027
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	7 cut(s)	174, 203, 273, 617, 658, 955, 1162
Bsp1720I	GCTNAGC	1 cut(s)	756
BspACI	CCGC	2 cut(s)	136, 1008
BspANI	GGCC	7 cut(s)	171, 468, 511, 772, 833, 1011, 1122
BspCNI	CTCAG	4 cut(s)	6, 748, 1303, 1307
BspHI	TCATGA	1 cut(s)	1165
BspLI	GGNNCC	1 cut(s)	1214
BspMI	ACCTGC	2 cut(s)	353, 970
BspPI	GGATC	1 cut(s)	625
BspQI	GCTCTTC	2 cut(s)	50, 153
BsrDI	GCAATG	3 cut(s)	267, 482, 741
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	568, 1091
BssECI	CCNNGG	3 cut(s)	78, 469, 1288
BssMI	GATC	7 cut(s)	174, 203, 273, 617, 658, 955, 1162
BssSI	CACGAG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	79, 127
Bst6I	CTCTTC	3 cut(s)	50, 153, 897
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	350, 586, 774
BstDEI	CTNAG	6 cut(s)	14, 196, 756, 1196, 1294, 1311
BstDSI	CCRYGG	2 cut(s)	78, 1288
BstF5I	GGATG	3 cut(s)	677, 927, 931
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	7 cut(s)	177, 206, 276, 620, 661, 958, 1165
BstMBI	GATC	7 cut(s)	174, 203, 273, 617, 658, 955, 1162
BstMWI	GCNNNNNNNGC	5 cut(s)	644, 653, 731, 969, 1119
BstSCI	CCNGG	2 cut(s)	468, 680
BstSLI	GKGCMC	2 cut(s)	989, 1027
BstX2I	RGATCY	3 cut(s)	273, 617, 955
BstYI	RGATCY	3 cut(s)	273, 617, 955
BsuRI	GGCC	7 cut(s)	171, 468, 511, 772, 833, 1011, 1122
BtgI	CCRYGG	2 cut(s)	78, 1288
BtsCI	GGATG	3 cut(s)	677, 927, 931
BtsIMutI	CAGTG	1 cut(s)	1231
BveI	ACCTGC	2 cut(s)	353, 970
Cac8I	GCNNGC	3 cut(s)	350, 586, 774
CaiI	CAGNNNCTG	1 cut(s)	13
CciI	TCATGA	1 cut(s)	1165
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	1212
Csp6I	GTAC	1 cut(s)	521
CspCI	CAANNNNNGTGG	4 cut(s)	234, 269, 582, 617
CviAII	CATG	7 cut(s)	38, 266, 335, 432, 648, 719, 1166
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	6 cut(s)	14, 196, 756, 1196, 1294, 1311
DpnI	GATC	7 cut(s)	176, 205, 275, 619, 660, 957, 1164
DpnII	GATC	7 cut(s)	174, 203, 273, 617, 658, 955, 1162
DriI	GACNNNNNGTC	1 cut(s)	934
EaeI	YGGCCR	5 cut(s)	169, 466, 770, 1009, 1120
Eam1104I	CTCTTC	3 cut(s)	50, 153, 897
Eam1105I	GACNNNNNGTC	1 cut(s)	934
EarI	CTCTTC	3 cut(s)	50, 153, 897
Ecl136II	GAGCTC	1 cut(s)	545
Eco147I	AGGCCT	2 cut(s)	511, 833
Eco24I	GRGCYC	2 cut(s)	45, 547
Eco47I	GGWCC	1 cut(s)	1212
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	803, 1207
EcoICRI	GAGCTC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	1212
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	45, 547
FaeI	CATG	7 cut(s)	41, 269, 338, 435, 651, 722, 1169
FalI	AAGNNNNNCTT	2 cut(s)	854, 886
FaqI	GGGAC	1 cut(s)	1198
FatI	CATG	7 cut(s)	37, 265, 334, 431, 647, 718, 1165
FauNDI	CATATG	1 cut(s)	968
FbaI	TGATCA	1 cut(s)	1162
FokI	GGATG	3 cut(s)	664, 934, 938
FriOI	GRGCYC	2 cut(s)	45, 547
FspBI	CTAG	4 cut(s)	92, 609, 824, 1037
GlaI	GCGC	1 cut(s)	116
HaeIII	GGCC	7 cut(s)	171, 468, 511, 772, 833, 1011, 1122
HapII	CCGG	4 cut(s)	303, 469, 681, 1173
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	7 cut(s)	41, 269, 338, 435, 651, 722, 1169
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	1327
HindII	GTYRAC	1 cut(s)	1327
HindIII	AAGCTT	2 cut(s)	84, 290
HinfI	GANTC	6 cut(s)	181, 226, 241, 326, 674, 1303
HpaII	CCGG	4 cut(s)	303, 469, 681, 1173
Hpy166II	GTNNAC	4 cut(s)	521, 987, 1025, 1327
Hpy188I	TCNGA	3 cut(s)	379, 783, 913
Hpy8I	GTNNAC	4 cut(s)	521, 987, 1025, 1327
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	4 cut(s)	341, 395, 756, 1293
HpyCH4III	ACNGT	2 cut(s)	79, 127
HpyCH4IV	ACGT	1 cut(s)	634
HpyF10VI	GCNNNNNNNGC	5 cut(s)	644, 653, 731, 969, 1119
HpyF3I	CTNAG	6 cut(s)	14, 196, 756, 1196, 1294, 1311
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	7 cut(s)	41, 269, 338, 435, 651, 722, 1169
HspAI	GCGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	1162
Kzo9I	GATC	7 cut(s)	174, 203, 273, 617, 658, 955, 1162
LguI	GCTCTTC	2 cut(s)	50, 153
LmnI	GCTCC	4 cut(s)	305, 473, 542, 722
LweI	GCATC	2 cut(s)	208, 1147
MaeI	CTAG	4 cut(s)	92, 609, 824, 1037
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	1 cut(s)	1081
MalI	GATC	7 cut(s)	176, 205, 275, 619, 660, 957, 1164
MboI	GATC	7 cut(s)	174, 203, 273, 617, 658, 955, 1162
MboII	GAAGA	5 cut(s)	37, 140, 393, 874, 884
MfeI	CAATTG	1 cut(s)	990
MflI	RGATCY	3 cut(s)	273, 617, 955
MhlI	GDGCHC	5 cut(s)	45, 547, 590, 989, 1027
MlsI	TGGCCA	3 cut(s)	171, 772, 1122
MluCI	AATT	4 cut(s)	68, 990, 1003, 1183
MluNI	TGGCCA	3 cut(s)	171, 772, 1122
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	9 cut(s)	605, 771, 789, 802, 835, 849, 1198, 1203, 1222
Mox20I	TGGCCA	3 cut(s)	171, 772, 1122
Mph1103I	ATGCAT	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	291
MscI	TGGCCA	3 cut(s)	171, 772, 1122
MseI	TTAA	5 cut(s)	210, 317, 801, 836, 1143
MslI	CAYNNNNRTG	2 cut(s)	717, 912
Msp20I	TGGCCA	3 cut(s)	171, 772, 1122
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	4 cut(s)	303, 469, 681, 1173
MspR9I	CCNGG	2 cut(s)	470, 682
MunI	CAATTG	1 cut(s)	990
MwoI	GCNNNNNNNGC	5 cut(s)	644, 653, 731, 969, 1119
NciI	CCSGG	2 cut(s)	470, 682
NdeI	CATATG	1 cut(s)	968
NdeII	GATC	7 cut(s)	174, 203, 273, 617, 658, 955, 1162
NlaIII	CATG	7 cut(s)	41, 269, 338, 435, 651, 722, 1169
NlaIV	GGNNCC	1 cut(s)	1214
NsiI	ATGCAT	1 cut(s)	267
PagI	TCATGA	1 cut(s)	1165
PaqCI	CACCTGC	1 cut(s)	970
PceI	AGGCCT	2 cut(s)	511, 833
PciSI	GCTCTTC	2 cut(s)	50, 153
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	5 cut(s)	181, 226, 326, 674, 1303
PfoI	TCCNGGA	1 cut(s)	680
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	1212
Psp124BI	GAGCTC	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	1212
PspN4I	GGNNCC	1 cut(s)	1214
PspPI	GGNCC	1 cut(s)	1212
PspPPI	RGGWCCY	1 cut(s)	1212
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	3 cut(s)	273, 617, 955
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	2 cut(s)	717, 912
SacI	GAGCTC	1 cut(s)	547
SapI	GCTCTTC	2 cut(s)	50, 153
SaqAI	TTAA	5 cut(s)	210, 317, 801, 836, 1143
Sau3AI	GATC	7 cut(s)	174, 203, 273, 617, 658, 955, 1162
Sau96I	GGNCC	1 cut(s)	1212
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	470, 682
SduI	GDGCHC	5 cut(s)	45, 547, 590, 989, 1027
SfaNI	GCATC	2 cut(s)	208, 1147
SinI	GGWCC	1 cut(s)	1212
SmiMI	CAYNNNNRTG	2 cut(s)	717, 912
Sse9I	AATT	4 cut(s)	68, 990, 1003, 1183
SseBI	AGGCCT	2 cut(s)	511, 833
SsiI	CCGC	2 cut(s)	136, 1008
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	4 cut(s)	92, 609, 824, 1037
SstI	GAGCTC	1 cut(s)	547
StuI	AGGCCT	2 cut(s)	511, 833
StyD4I	CCNGG	2 cut(s)	468, 680
TaaI	ACNGT	2 cut(s)	79, 127
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	4 cut(s)	122, 177, 502, 1108
TasI	AATT	4 cut(s)	68, 990, 1003, 1183
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	1 cut(s)	1011
TfiI	GAWTC	5 cut(s)	181, 226, 326, 674, 1303
Tru1I	TTAA	5 cut(s)	210, 317, 801, 836, 1143
Tru9I	TTAA	5 cut(s)	210, 317, 801, 836, 1143
TscAI	CASTG	1 cut(s)	1231
TspDTI	ATGAA	8 cut(s)	48, 140, 323, 420, 587, 666, 738, 1332
TspGWI	ACGGA	3 cut(s)	38, 555, 1277
TspRI	CASTG	1 cut(s)	1231
VneI	GTGCAC	2 cut(s)	985, 1023
VpaK11BI	GGWCC	1 cut(s)	1212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1123
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	4 cut(s)	92, 609, 824, 1037
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.