Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

57448872 .. 57449225

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG384600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTTCGATTCCCTTCACGGAAGAACTTGTTTGCATTATGCTGCTTACTATGGCCATGCCGATTGCCTCCAGGCCATTGTTTCCGCTGCTCAATCAAATCATGTAGCTGTTTCATGGGGATTTGCGCGATTTGTGAATATTAGAGATGGTAGGGGAGCGACCCCGTTGCATTTAGCATCAAGGCGAAGTAGGCCTGAATGTGCACGTATATTGTTAGACAACGGAGCTCTTGTTTGTGCTTCAACTGGCGGATATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

86

Amino Acids

9.25

Weight (kDa)

8.88

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank	PF00023	6 - 30	7.3e-06	Ankyrin repeat
Ank_2	PF12796	6 - 78	9.4e-12	Ankyrin repeats (3 copies)
Ank_5	PF13857	45 - 76	4.5e-06	Ankyrin repeats (many copies)
Ank	PF00023	52 - 81	1.2e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	127
AciI	CCGC	2 cut(s)	84, 249
AcoI	YGGCCR	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	2 cut(s)	107, 227
AluI	AGCT	2 cut(s)	107, 227
Alw21I	GWGCWC	2 cut(s)	205, 229
Alw44I	GTGCAC	1 cut(s)	201
AoxI	GGCC	3 cut(s)	52, 72, 191
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	41, 86
AspLEI	GCGC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	205, 229
BbvI	GCAGC	2 cut(s)	28, 73
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	42, 87
BlsI	GCNGC	2 cut(s)	43, 88
Bme1390I	CCNGG	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	28, 73
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	54, 74, 193
BsiHKAI	GWGCWC	2 cut(s)	205, 229
BsnI	GGCC	3 cut(s)	54, 74, 193
Bsp1286I	GDGCHC	2 cut(s)	205, 229
BspACI	CCGC	2 cut(s)	84, 249
BspANI	GGCC	3 cut(s)	54, 74, 193
BspFNI	CGCG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	206
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	28, 73
BsuRI	GGCC	3 cut(s)	54, 74, 193
CfoI	GCGC	1 cut(s)	127
CviAII	CATG	3 cut(s)	56, 101, 114
CviJI	RGCY	5 cut(s)	54, 74, 107, 193, 227
CviKI_1	RGCY	5 cut(s)	54, 74, 107, 193, 227
EaeI	YGGCCR	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	3 cut(s)	59, 104, 117
FaiI	YATR	7 cut(s)	39, 51, 57, 102, 115, 209, 255
FatI	CATG	3 cut(s)	55, 100, 113
Fnu4HI	GCNGC	2 cut(s)	42, 87
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	2 cut(s)	42, 87
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	42, 87
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	54, 74, 193
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	59, 104, 117
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	34, 169, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	59, 104, 117
HspAI	GCGC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	155, 224
LpnPI	CCDG	4 cut(s)	56, 83, 207, 231
Lsp1109I	GCAGC	2 cut(s)	28, 73
LweI	GCATC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	205
MboII	GAAGA	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	205, 229
MlsI	TGGCCA	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	54
MnlI	CCTC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	190
NlaIII	CATG	3 cut(s)	59, 104, 117
PceI	AGGCCT	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	43, 88
Ppu21I	YACGTR	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	229
SatI	GCNGC	2 cut(s)	42, 87
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	205, 229
SetI	ASST	3 cut(s)	109, 208, 229
SfaNI	GCATC	1 cut(s)	185
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	2 cut(s)	84, 249
SspI	AATATT	1 cut(s)	139
SstI	GAGCTC	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	69
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	41, 86
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	2 cut(s)	33, 237
VneI	GTGCAC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.