Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000170.1

Orthogroup ID

OG0001131

Physical Location & Seq

Genomic Coordinates Reverse (-)

15754 .. 16656

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000170.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgccatatatagttgctttgaaacacaaacatggagcttgtgcagctatgctaaatccgtcatcagctgagcctctggtgtggccgtcacctttgaagtttattagtgagcttaatgaggaggcaaaagctttgttagaacaggccttaacggaggcaaacaaggagagggagaagaacatcttgaaaggaagcggttactctcttgcatctccatcgcattctgatgtgcattctgatatagggatggatgacaatctttctgaggcaagtgattcggatttatgctgcatatgctttgagcaggtgtgcacaattgaggtccagaattgtggccaccaaatgtgtgcgcaatgcactctagccctctgctgccacaacaagcctaaccctaatacactatgcctaaccccgccagtttgccctttctgccgaagcaccatagcctgtctggtggtggcaaagatcaaaagtcatgatgatgctgatcttgacactggtgacaacatctcctccaagctaagaaaggcaagaaagtcccgaaacttcagcgagggtagcagcagcttcaagagcttgtcggcaatgaattcgttcggaaaaatgggtggtcgtggctcaggaaggattgttgcagagaatgagtgggctgacaagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

220

Amino Acids

23.78

Weight (kDa)

6.16

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28840 AT2G28840
fragaria_vesca	FvH4_3g35930 FvH4_6g13990 FvH4_6g13990 FvH4_6g13990
malus_domestica	MD03G1096100.v1.1 MD04G1126800.v1.1 MD11G1110600.v1.1 MD12G1078200.v1.1
prunus_persica	Prupe.6G079100_v2.0.a1 Prupe.6G253500_v2.0.a1 Prupe.6G253500_v2.0.a1
pyrus_communis	pycom03g07860 pycom04g11370 pycom11g09140 pycom12g13520
rosa_chinensis	RchiOBHm_Chr1g0314361 RchiOBHm_Chr1g0357421 RchiOBHm_Chr2g0133681 RchiOBHm_Chr3g0466811 RchiOBHm_Chr3g0487431 RchiOBHm_Chr5g0038661 RchiOBHm_Chr5g0051561 RchiOBHm_Chr5g0064211
rosa_laevigata	RLG00000024550 RLG00000035712
rosa_multiflora	Rmu_sc0000147.1_g000071 Rmu_sc0000259.1_g000037 Rmu_sc0000259.1_g000038 Rmu_sc0000924.1_g000027 Rmu_sc0008017.1_g000003 Rmu_sc0011921.1_g000015 Rmu_ssc0000170.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016740 Rroxscaffold_1G00038780 Rroxscaffold_4G00300840 Rroxscaffold_6G00414120
rosa_rugosa	Rorug03G0083800 Rorug05G0363400
rosa_samantha	Rh2AG384600 Rh2BG197500 Rh2BG371900 Rh2BG492700 Rh2DG501500 Rh3AG131400 Rh3BG152500 Rh3DG153600 Rh5AG421300 Rh5BG362000 Rh5BG436900 Rh5CG459600 Rh5DG450300 Rh6DG133300 Rh7AG222900
rosa_wichuraiana	Rw2G039230 Rw3G012420 Rw5G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc16I	TGCGCA	1 cut(s)	351
Acc36I	ACCTGC	1 cut(s)	295
AciI	CCGC	2 cut(s)	195, 413
AcoI	YGGCCR	2 cut(s)	83, 334
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	532
AgsI	TTSAA	4 cut(s)	22, 97, 187, 571
AluBI	AGCT	8 cut(s)	38, 47, 68, 112, 131, 520, 567, 576
AluI	AGCT	8 cut(s)	38, 47, 68, 112, 131, 520, 567, 576
Alw21I	GWGCWC	1 cut(s)	314
Alw44I	GTGCAC	1 cut(s)	310
AoxI	GGCC	3 cut(s)	83, 144, 334
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	5 cut(s)	44, 288, 372, 561, 564
ApoI	RAATTY	1 cut(s)	589
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	81, 512
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	5 cut(s)	56, 275, 359, 573, 576
BccI	CCATC	2 cut(s)	223, 241
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	6 cut(s)	198, 232, 258, 292, 573, 607
BfaI	CTAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	5 cut(s)	45, 289, 373, 562, 565
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	5 cut(s)	46, 290, 374, 563, 566
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmsI	GCATC	2 cut(s)	218, 472
Bpu10I	CCTNAGC	1 cut(s)	619
Bpu1102I	GCTNAGC	1 cut(s)	69
BsaBI	GATNNNNATC	2 cut(s)	255, 486
BsaXI	ACNNNNNCTCC	4 cut(s)	494, 497, 524, 527
Bse1I	ACTGG	2 cut(s)	416, 502
Bse3DI	GCAATG	2 cut(s)	359, 591
Bse8I	GATNNNNATC	2 cut(s)	255, 486
BseGI	GGATG	2 cut(s)	252, 256
BseJI	GATNNNNATC	2 cut(s)	255, 486
BseMI	GCAATG	2 cut(s)	359, 591
BseMII	CTCAG	3 cut(s)	60, 255, 633
BseNI	ACTGG	2 cut(s)	416, 502
BseRI	GAGGAG	2 cut(s)	134, 502
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	5 cut(s)	56, 275, 359, 573, 576
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	85, 146, 336
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	523
BsmI	GAATGC	2 cut(s)	220, 232
BsnI	GGCC	3 cut(s)	85, 146, 336
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	465, 487
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	2 cut(s)	195, 413
BspANI	GGCC	3 cut(s)	85, 146, 336
BspCNI	CTCAG	3 cut(s)	61, 256, 632
BspHI	TCATGA	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	359, 591
BsrI	ACTGG	2 cut(s)	416, 502
BssMI	GATC	2 cut(s)	465, 487
BstDEI	CTNAG	4 cut(s)	69, 264, 521, 619
BstF5I	GGATG	2 cut(s)	252, 256
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	2 cut(s)	468, 490
BstMBI	GATC	2 cut(s)	465, 487
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 294, 429, 558, 573
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	5 cut(s)	56, 275, 359, 573, 576
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	85, 146, 336
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	252, 256
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	475
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	322
CviAII	CATG	2 cut(s)	32, 476
DdeI	CTNAG	4 cut(s)	69, 264, 521, 619
DpnI	GATC	2 cut(s)	467, 489
DpnII	GATC	2 cut(s)	465, 487
EaeI	YGGCCR	2 cut(s)	83, 334
Eco147I	AGGCCT	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	589
FaeI	CATG	2 cut(s)	35, 479
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	2 cut(s)	31, 475
FauI	CCCGC	1 cut(s)	420
FauNDI	CATATG	1 cut(s)	293
Fnu4HI	GCNGC	5 cut(s)	45, 289, 373, 562, 565
FokI	GGATG	2 cut(s)	259, 263
Fsp4HI	GCNGC	5 cut(s)	45, 289, 373, 562, 565
FspBI	CTAG	1 cut(s)	362
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	5 cut(s)	45, 289, 373, 562, 565
HaeIII	GGCC	3 cut(s)	85, 146, 336
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	2 cut(s)	35, 479
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	1 cut(s)	275
HphI	GGTGA	2 cut(s)	81, 512
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	5 cut(s)	226, 238, 265, 280, 599
Hpy188III	TCNNGA	7 cut(s)	184, 325, 476, 491, 540, 571, 621
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	618
HpyCH4V	TGCA	7 cut(s)	44, 209, 232, 291, 312, 357, 635
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 294, 429, 558, 573
HpyF3I	CTNAG	4 cut(s)	69, 264, 521, 619
Hsp92II	CATG	2 cut(s)	35, 479
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	2 cut(s)	465, 487
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	9 cut(s)	62, 128, 290, 338, 429, 437, 460, 483, 606
Lsp1109I	GCAGC	5 cut(s)	56, 275, 359, 573, 576
LweI	GCATC	2 cut(s)	218, 472
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	3 cut(s)	87, 197, 500
MalI	GATC	2 cut(s)	467, 489
MboI	GATC	2 cut(s)	465, 487
MboII	GAAGA	1 cut(s)	187
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	336
MluCI	AATT	3 cut(s)	315, 328, 589
MluNI	TGGCCA	1 cut(s)	336
Mox20I	TGGCCA	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	336
MseI	TTAA	2 cut(s)	114, 149
MslI	CAYNNNNRTG	3 cut(s)	30, 225, 480
Msp20I	TGGCCA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	2 cut(s)	220, 232
MwoI	GCNNNNNNNGC	5 cut(s)	44, 294, 429, 558, 573
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	2 cut(s)	465, 487
NlaIII	CATG	2 cut(s)	35, 479
NmuCI	GTSAC	2 cut(s)	87, 500
NsbI	TGCGCA	1 cut(s)	351
PagI	TCATGA	1 cut(s)	475
PaqCI	CACCTGC	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	146
PctI	GAATGC	2 cut(s)	220, 232
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	5 cut(s)	46, 290, 374, 563, 566
PspPI	GGNCC	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	68
RseI	CAYNNNNRTG	3 cut(s)	30, 225, 480
SaqAI	TTAA	2 cut(s)	114, 149
SatI	GCNGC	5 cut(s)	45, 289, 373, 562, 565
Sau3AI	GATC	2 cut(s)	465, 487
Sau96I	GGNCC	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	2 cut(s)	218, 472
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	3 cut(s)	30, 225, 480
Sse9I	AATT	3 cut(s)	315, 328, 589
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	195, 413
SspMI	CTAG	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	146
TasI	AATT	3 cut(s)	315, 328, 589
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	114, 149
Tru9I	TTAA	2 cut(s)	114, 149
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	87, 500
TseI	GCWGC	5 cut(s)	44, 288, 372, 561, 564
Tsp45I	GTSAC	2 cut(s)	87, 500
TspDTI	ATGAA	1 cut(s)	602
TspGWI	ACGGA	2 cut(s)	48, 167
TspRI	CASTG	1 cut(s)	502
VneI	GTGCAC	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.