AT2G31410

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001180
Physical Location & Seq
Reverse (-)
13391881 .. 13392927
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31410.1

Sequence Viewer

Length: 600 bp
ATGGCTTGCACCGTAGATTTCCGGTGCCTTGACGAAGGATTCGGCGGCAAAACCTACAAACGCAAACGCGAATCTCAAGAACAAGCCGCCGCCGAAGCAATCGCCGATGAAGCTTCCATGGACATCGATGGTGCTCCTCCTGCCGCGAAACGTAGCGCCGTCGCTTCCTCTGAAAATCCAGACAAACCTATTGCTCTAGCTGTCGAGAGACCAACCTACGACGGTGTAATCGCCGGGAAAGTCTCCGGACGGAACTGGAAACAGCCGCGAACTCATAGATCTTCAGGGAGGTTTGTGAAGAACAGGAAACCAGATCTGGAGGAGATGAAGAGGCAAAGGGAGATTAAGAAAGCGTATAAGGAGAGGGTGAATGAGCTGAAGGAAGAGATTAGGAGTAATAAGGTTGAGAAGAGGAAGAAGAAGGAAGAGAGAGAGAAGCGGAAGAAGGAGAATGTTTTGAGAACTGGTACTAAGTTGCAGAAGATTACAAATCCCAAGACTTTGAAGAAAATTTCTATGTCTAAGAAGCAGAGGAAGCAGCTTAAGAAAATTCCTGACGAGATGTTGAGTGGTGGTAGCAAGAAGAGTATCACGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cgr1

Protein Analysis

199

Amino Acids

22.7

Weight (kDa)

10.11

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 24
AccII CGCG 3 cut(s) 69, 146, 268
AccIII TCCGGA 1 cut(s) 245
AciI CCGC 6 cut(s) 45, 87, 90, 144, 266, 439
AcsI RAATTY 2 cut(s) 510, 549
AcuI CTGAAG 2 cut(s) 267, 398
AfaI GTAC 1 cut(s) 469
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 1 cut(s) 505
AluBI AGCT 4 cut(s) 113, 200, 376, 541
AluI AGCT 4 cut(s) 113, 200, 376, 541
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 202, 247
Aor13HI TCCGGA 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 2 cut(s) 510, 549
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspLEI GCGC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 379
BanI GGYRCC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 550
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 143
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 202, 247
BfaI CTAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 542
BglII AGATCT 2 cut(s) 278, 313
BisI GCNGC 6 cut(s) 46, 87, 90, 144, 266, 539
BlsI GCNGC 6 cut(s) 47, 88, 91, 145, 267, 540
Bme1390I CCNGG 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 235
Bsa29I ATCGAT 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 2 cut(s) 21, 245
Bse1I ACTGG 2 cut(s) 260, 469
BseAI TCCGGA 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 260, 469
BseRI GAGGAG 2 cut(s) 126, 335
BseXI GCAGC 1 cut(s) 550
Bsh1236I CGCG 3 cut(s) 69, 146, 268
BshNI GGYRCC 1 cut(s) 24
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 3 cut(s) 22, 234, 246
BsmAI GTCTC 2 cut(s) 202, 247
Bso31I GGTCTC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 136
Bsp13I TCCGGA 1 cut(s) 245
Bsp143I GATC 2 cut(s) 278, 313
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 6 cut(s) 45, 87, 90, 144, 266, 439
BspDI ATCGAT 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 245
BspFNI CGCG 3 cut(s) 69, 146, 268
BspLI GGNNCC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 24
BspTI CTTAAG 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 202
BsrI ACTGG 2 cut(s) 260, 469
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 278, 313
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 13, 224
Bst6I CTCTTC 5 cut(s) 323, 378, 404, 420, 578
BstAFI CTTAAG 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 471, 522
BstDSI CCRYGG 1 cut(s) 117
BstFNI CGCG 3 cut(s) 69, 146, 268
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 281, 316
BstMAI GTCTC 2 cut(s) 202, 247
BstMBI GATC 2 cut(s) 278, 313
BstMWI GCNNNNNNNGC 4 cut(s) 95, 110, 140, 535
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 3 cut(s) 69, 146, 268
BstV1I GCAGC 1 cut(s) 550
BstX2I RGATCY 2 cut(s) 278, 313
BstYI RGATCY 2 cut(s) 278, 313
Bsu15I ATCGAT 1 cut(s) 126
BsuTUI ATCGAT 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 158
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 1 cut(s) 468
CviAII CATG 1 cut(s) 118
CviJI RGCY 7 cut(s) 5, 86, 113, 200, 265, 376, 541
CviKI_1 RGCY 7 cut(s) 5, 86, 113, 200, 265, 376, 541
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 2 cut(s) 471, 522
DpnI GATC 2 cut(s) 280, 315
DpnII GATC 2 cut(s) 278, 313
Eam1104I CTCTTC 5 cut(s) 323, 378, 404, 420, 578
EarI CTCTTC 5 cut(s) 323, 378, 404, 420, 578
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 267, 398
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 121
FaiI YATR 4 cut(s) 119, 276, 357, 518
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 6 cut(s) 46, 87, 90, 144, 266, 539
Fsp4HI GCNGC 6 cut(s) 46, 87, 90, 144, 266, 539
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 157
GluI GCNGC 6 cut(s) 46, 87, 90, 144, 266, 539
GsuI CTGGAG 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 159
HapII CCGG 3 cut(s) 22, 234, 246
HhaI GCGC 1 cut(s) 158
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 2 cut(s) 39, 71
HpaII CCGG 3 cut(s) 22, 234, 246
HphI GGTGA 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 7 cut(s) 77, 179, 205, 246, 317, 554, 592
Hpy99I CGWCG 2 cut(s) 164, 224
HpyAV CCTTC 4 cut(s) 29, 373, 415, 439
HpyCH4III ACNGT 2 cut(s) 13, 224
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 9, 478
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 110, 140, 535
HpyF3I CTNAG 2 cut(s) 471, 522
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 156
Kpn2I TCCGGA 1 cut(s) 245
Kzo9I GATC 2 cut(s) 278, 313
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 1 cut(s) 550
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 151
MalI GATC 2 cut(s) 280, 315
MboI GATC 2 cut(s) 278, 313
MflI RGATCY 2 cut(s) 278, 313
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 3 cut(s) 510, 549, 595
MnlI CCTC 8 cut(s) 147, 178, 282, 313, 324, 357, 405, 525
MroI TCCGGA 1 cut(s) 245
MseI TTAA 2 cut(s) 345, 543
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 3 cut(s) 22, 234, 246
MspR9I CCNGG 1 cut(s) 235
MvnI CGCG 3 cut(s) 69, 146, 268
MwoI GCNNNNNNNGC 4 cut(s) 95, 110, 140, 535
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 278, 313
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 39, 71
PkrI GCNGC 6 cut(s) 47, 88, 91, 145, 267, 540
PspN4I GGNNCC 1 cut(s) 26
PsuI RGATCY 2 cut(s) 278, 313
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 345, 543
SatI GCNGC 6 cut(s) 46, 87, 90, 144, 266, 539
Sau3AI GATC 2 cut(s) 278, 313
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 75, 542
SmoI CTYRAG 2 cut(s) 75, 542
Sse9I AATT 3 cut(s) 510, 549, 595
SsiI CCGC 6 cut(s) 45, 87, 90, 144, 266, 439
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 13, 224
TaiI ACGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 126, 204
TasI AATT 3 cut(s) 510, 549, 595
TauI GCSGC 5 cut(s) 48, 89, 92, 146, 268
TfiI GAWTC 2 cut(s) 39, 71
Tru1I TTAA 2 cut(s) 345, 543
Tru9I TTAA 2 cut(s) 345, 543
TseI GCWGC 1 cut(s) 538
TspDTI ATGAA 2 cut(s) 123, 341
TspGWI ACGGA 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 542
XapI RAATTY 2 cut(s) 510, 549
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.