Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

23831288 .. 23834248

Gene Structure 2961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0165700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGGGTCGAGGCCTCAATTCAGATAGCCCATTCGAGTCTGTGACGGTGTCGCTTGACCTTAATTTGCGCGGCATTAATTCACTAGACAACGCTTCCATAGTCAGCCGCCGCGTGATGGGCTTCTGCCAATTACGATTGGTTTTGGATTACAGAACCAGATCGGGGAAGCTAAGGTATCATTTGCTATGGGAATCTGAGTTTCTATTAGTGAGGTGGAGTCTTTGTATGAGCTATAGAATTCTTGGAGTGGATTTGGAAAAGGTGGCAGAAATGGCAATGACATCATCCGCTTTGAAAGTGGAAGAGCTCAAGCTTGTTGTGATTCAAAATAGCAGTAAGCAGAGCCTCTTTTTTGACAGGGCAGATATCTCTAGCATTTCCCAGCTTTTTGCTGCATACAAAGGCAGAGGAGTATCAGTTGCCGAAAACTACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

146

Amino Acids

16.48

Weight (kDa)

9.0

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	72, 114
AciI	CCGC	4 cut(s)	72, 109, 112, 291
AcsI	RAATTY	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	118, 165
AgsI	TTSAA	2 cut(s)	298, 329
AluBI	AGCT	5 cut(s)	172, 234, 310, 316, 388
AluI	AGCT	5 cut(s)	172, 234, 310, 316, 388
Alw21I	GWGCWC	1 cut(s)	312
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	240
AseI	ATTAAT	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	86, 375
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	4 cut(s)	73, 109, 112, 396
BlsI	GCNGC	4 cut(s)	74, 110, 113, 397
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	296
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 165
Bse3DI	GCAATG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	118, 165
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	382
BseYI	CCCAGC	1 cut(s)	384
Bsh1236I	CGCG	2 cut(s)	72, 114
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	118, 165
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	161
BspACI	CCGC	4 cut(s)	72, 109, 112, 291
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	2 cut(s)	72, 114
BspQI	GCTCTTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	285
BssMI	GATC	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	173, 198
BstF5I	GGATG	1 cut(s)	287
BstFNI	CGCG	2 cut(s)	72, 114
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 275
BstSFI	CTRYAG	1 cut(s)	235
BstUI	CGCG	2 cut(s)	72, 114
BstV1I	GCAGC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	173, 198
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	240
EcoRV	GATATC	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	312
FaiI	YATR	6 cut(s)	101, 190, 230, 237, 400, 439
Fnu4HI	GCNGC	4 cut(s)	73, 109, 112, 396
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	4 cut(s)	73, 109, 112, 396
FspBI	CTAG	2 cut(s)	86, 375
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	4 cut(s)	73, 109, 112, 396
GsaI	CCCAGC	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	4 cut(s)	38, 194, 220, 325
Hpy188I	TCNGA	2 cut(s)	25, 199
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 275
HpyF3I	CTNAG	2 cut(s)	173, 198
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	161
LguI	GCTCTTC	1 cut(s)	300
LpnPI	CCDG	3 cut(s)	172, 346, 398
Lsp1109I	GCAGC	1 cut(s)	382
MaeI	CTAG	2 cut(s)	86, 375
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	5 cut(s)	19, 64, 79, 131, 240
MlyI	GAGTC	2 cut(s)	47, 229
MnlI	CCTC	5 cut(s)	5, 26, 207, 359, 404
MseI	TTAA	2 cut(s)	63, 78
MvnI	CGCG	2 cut(s)	72, 114
MwoI	GCNNNNNNNGC	2 cut(s)	120, 275
NdeII	GATC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	194, 325
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	74, 110, 113, 397
PleI	GAGTC	2 cut(s)	46, 228
PpsI	GAGTC	2 cut(s)	46, 228
PshBI	ATTAAT	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	384
PsyI	GACNNNGTC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	63, 78
SatI	GCNGC	4 cut(s)	73, 109, 112, 396
Sau3AI	GATC	1 cut(s)	161
SchI	GAGTC	2 cut(s)	47, 229
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	9 cut(s)	63, 174, 179, 218, 236, 267, 312, 318, 390
SfcI	CTRYAG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	19, 64, 79, 131, 240
SseBI	AGGCCT	1 cut(s)	15
SsiI	CCGC	4 cut(s)	72, 109, 112, 291
SspMI	CTAG	2 cut(s)	86, 375
SstI	GAGCTC	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	10, 36
TasI	AATT	5 cut(s)	19, 64, 79, 131, 240
TauI	GCSGC	3 cut(s)	75, 111, 114
TfiI	GAWTC	2 cut(s)	194, 325
Tru1I	TTAA	2 cut(s)	63, 78
Tru9I	TTAA	2 cut(s)	63, 78
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	1 cut(s)	240
XspI	CTAG	2 cut(s)	86, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.