Rh5CG361400

Cgr1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001180
Physical Location & Seq
Forward (+)
43230354 .. 43233326
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG361400.1

Sequence Viewer

Length: 585 bp
ATGGCCTGCACAATCGACTTCCGCTGCCTAGACGAAGGCTTCGGCGGCAAAACCTACAAGCGCAAGCGGAACCCCGCCGACGAAGAAGATGCCGCCATGGAAATCGACGCCGCCGCCGCCTATCCACCTCCGGCGAAGCGATCCGCGGTGTCCTCCTCGGACAATCCGGACAAACCGGTCTTCGGCCGGCCGAGCTACGACGGCGTGATCGCCGGGAAGGTCTCCGGGCGGAAGTGGAAGCAGCCGCGGAAGCAGAGGTCGTCGGCGCTCCAGGTGAGCCGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAGAGGAACAAGGAGGAGAAGAGGAGGAAGAGGGAGGAGAGGGAGAAGAAGAAGAAGGAGAATATTCTCAAGACTGGGACCAAGCTGCAGATTATTTCCAACCCCAAGACGATTCAGAGGATTTCGAAAACCAAGGCCAGGAATCAACTCAAGCCTGTTCCCGAGGAGATGATCAAGAGGAACAATAAGAAGAGCGGCCTTTTGCTTACGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cgr1

Protein Analysis

194

Amino Acids

22.19

Weight (kDa)

10.16

Isoelectric Point (pI)

70.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cgr1 PF03879 72 - 172 2.7e-07 Cgr1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccBSI CCGCTC 1 cut(s) 564
AccII CGCG 2 cut(s) 146, 247
AccIII TCCGGA 1 cut(s) 166
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 2 cut(s) 184, 188
AcuI CTGAAG 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 182, 507
AgeI ACCGGT 1 cut(s) 175
AjnI CCWGG 2 cut(s) 270, 506
AluBI AGCT 3 cut(s) 195, 355, 454
AluI AGCT 3 cut(s) 195, 355, 454
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 530
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 5 cut(s) 3, 184, 188, 504, 565
ApeKI GCWGC 3 cut(s) 24, 241, 454
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AsiGI ACCGGT 1 cut(s) 175
AspLEI GCGC 2 cut(s) 63, 268
AspS9I GGNCC 1 cut(s) 447
AsuC2I CCSGG 2 cut(s) 214, 226
AsuHPI GGTGA 2 cut(s) 286, 334
AsuII TTCGAA 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 447
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbsI GAAGAC 1 cut(s) 172
BbvI GCAGC 3 cut(s) 11, 253, 441
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 272, 508
BclI TGATCA 1 cut(s) 540
BcnI CCSGG 2 cut(s) 214, 226
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 455
BfoI RGCGCY 1 cut(s) 269
Bme1390I CCNGG 4 cut(s) 214, 226, 272, 508
Bme18I GGWCC 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 447
BmiI GGNNCC 2 cut(s) 71, 448
BmrFI CCNGG 4 cut(s) 214, 226, 272, 508
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 2 cut(s) 422, 503
BpuMI CCSGG 2 cut(s) 214, 226
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 6 cut(s) 96, 144, 156, 245, 501, 531
BsaWI WCCGGW 2 cut(s) 166, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 507
Bse118I RCCGGY 2 cut(s) 175, 186
Bse1I ACTGG 1 cut(s) 448
BseAI TCCGGA 1 cut(s) 166
BseBI CCWGG 2 cut(s) 272, 508
BseDI CCNNGG 6 cut(s) 96, 144, 156, 245, 501, 531
BseLI CCNNNNNNNGG 2 cut(s) 182, 507
BseNI ACTGG 1 cut(s) 448
BseRI GAGGAG 6 cut(s) 145, 314, 398, 406, 419, 548
BseX3I CGGCCG 2 cut(s) 184, 188
BseXI GCAGC 3 cut(s) 11, 253, 441
Bsh1236I CGCG 2 cut(s) 146, 247
Bsh1285I CGRYCG 2 cut(s) 187, 191
BshFI GGCC 5 cut(s) 5, 186, 190, 506, 567
BshTI ACCGGT 1 cut(s) 175
BsiEI CGRYCG 2 cut(s) 187, 191
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 7 cut(s) 131, 167, 176, 187, 213, 225, 280
BslFI GGGAC 2 cut(s) 301, 460
BslI CCNNNNNNNGG 2 cut(s) 182, 507
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 2 cut(s) 301, 460
BsnI GGCC 5 cut(s) 5, 186, 190, 506, 567
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 530
Bsp119I TTCGAA 1 cut(s) 494
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 3 cut(s) 140, 207, 540
Bsp19I CCATGG 1 cut(s) 96
BspANI GGCC 5 cut(s) 5, 186, 190, 506, 567
BspEI TCCGGA 1 cut(s) 166
BspFNI CGCG 2 cut(s) 146, 247
BspLI GGNNCC 2 cut(s) 71, 448
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 554
BspT104I TTCGAA 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 564
BsrFI RCCGGY 2 cut(s) 175, 186
BsrI ACTGG 1 cut(s) 448
BssAI RCCGGY 2 cut(s) 175, 186
BssECI CCNNGG 6 cut(s) 96, 144, 156, 245, 501, 531
BssMI GATC 3 cut(s) 140, 207, 540
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 96, 501
Bst2UI CCWGG 2 cut(s) 272, 508
Bst6I CTCTTC 3 cut(s) 383, 392, 554
BstACI GRCGYC 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 7, 65, 188
BstDSI CCRYGG 3 cut(s) 96, 144, 245
BstFNI CGCG 2 cut(s) 146, 247
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 63, 268
BstKTI GATC 3 cut(s) 143, 210, 543
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 140, 207, 540
BstMCI CGRYCG 2 cut(s) 187, 191
BstMWI GCNNNNNNNGC 5 cut(s) 45, 116, 192, 201, 250
BstNI CCWGG 2 cut(s) 272, 508
BstSCI CCNGG 4 cut(s) 212, 224, 270, 506
BstSFI CTRYAG 1 cut(s) 455
BstUI CGCG 2 cut(s) 146, 247
BstV1I GCAGC 3 cut(s) 11, 253, 441
BstV2I GAAGAC 1 cut(s) 172
BstZI CGGCCG 2 cut(s) 184, 188
BsuRI GGCC 5 cut(s) 5, 186, 190, 506, 567
BtgI CCRYGG 3 cut(s) 96, 144, 245
Cac8I GCNNGC 3 cut(s) 7, 65, 188
CfoI GCGC 2 cut(s) 63, 268
Cfr10I RCCGGY 2 cut(s) 175, 186
Cfr13I GGNCC 1 cut(s) 447
Cfr42I CCGCGG 2 cut(s) 147, 248
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 334
CspAI ACCGGT 1 cut(s) 175
CviAII CATG 1 cut(s) 97
CviQI GTAC 1 cut(s) 334
DpnI GATC 3 cut(s) 142, 209, 542
DpnII GATC 3 cut(s) 140, 207, 540
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 184, 188
EagI CGGCCG 2 cut(s) 184, 188
Eam1104I CTCTTC 3 cut(s) 383, 392, 554
EarI CTCTTC 3 cut(s) 383, 392, 554
EciI GGCGGA 2 cut(s) 244, 365
EclXI CGGCCG 2 cut(s) 184, 188
Eco130I CCWWGG 2 cut(s) 96, 501
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 447
Eco52I CGGCCG 2 cut(s) 184, 188
Eco57I CTGAAG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 270, 506
EcoT14I CCWWGG 2 cut(s) 96, 501
ErhI CCWWGG 2 cut(s) 96, 501
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FaqI GGGAC 2 cut(s) 301, 460
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 82
FbaI TGATCA 1 cut(s) 540
FseI GGCCGGCC 1 cut(s) 190
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 62, 267
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 5 cut(s) 5, 186, 190, 506, 567
HapII CCGG 7 cut(s) 131, 167, 176, 187, 213, 225, 280
HgaI GACGC 1 cut(s) 116
HhaI GCGC 2 cut(s) 63, 268
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 2 cut(s) 61, 266
HinP1I GCGC 2 cut(s) 61, 266
HinfI GANTC 2 cut(s) 481, 511
HpaII CCGG 7 cut(s) 131, 167, 176, 187, 213, 225, 280
HphI GGTGA 2 cut(s) 286, 334
Hpy188I TCNGA 2 cut(s) 160, 486
Hpy188III TCNNGA 4 cut(s) 167, 439, 530, 544
Hpy99I CGWCG 5 cut(s) 83, 110, 203, 265, 295
HpyAV CCTTC 6 cut(s) 29, 211, 277, 322, 352, 418
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 9, 457
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 116, 192, 201, 250
HpySE526I ACGT 1 cut(s) 293
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 2 cut(s) 61, 266
Kpn2I TCCGGA 1 cut(s) 166
KroI GCCGGC 1 cut(s) 186
KroNI GCCGGC 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 540
KspI CCGCGG 2 cut(s) 147, 248
Kzo9I GATC 3 cut(s) 140, 207, 540
LguI GCTCTTC 1 cut(s) 554
LmnI GCTCC 2 cut(s) 273, 352
Lsp1109I GCAGC 3 cut(s) 11, 253, 441
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 293
MalI GATC 3 cut(s) 142, 209, 542
MbiI CCGCTC 1 cut(s) 564
MboI GATC 3 cut(s) 140, 207, 540
MmeI TCCRAC 1 cut(s) 492
MroI TCCGGA 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 186
MseI TTAA 1 cut(s) 369
MspA1I CMGCKG 3 cut(s) 24, 146, 247
MspI CCGG 7 cut(s) 131, 167, 176, 187, 213, 225, 280
MspR9I CCNGG 4 cut(s) 214, 226, 272, 508
MvaI CCWGG 2 cut(s) 272, 508
MvnI CGCG 2 cut(s) 146, 247
MwoI GCNNNNNNNGC 5 cut(s) 45, 116, 192, 201, 250
NaeI GCCGGC 1 cut(s) 188
NciI CCSGG 2 cut(s) 214, 226
NcoI CCATGG 1 cut(s) 96
NdeII GATC 3 cut(s) 140, 207, 540
NgoMIV GCCGGC 1 cut(s) 186
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 2 cut(s) 71, 448
NmeAIII GCCGAG 1 cut(s) 216
NspV TTCGAA 1 cut(s) 494
PciSI GCTCTTC 1 cut(s) 554
PdiI GCCGGC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 481, 511
PinAI ACCGGT 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 270, 506
PspGI CCWGG 2 cut(s) 270, 506
PspN4I GGNNCC 2 cut(s) 71, 448
PspPI GGNCC 1 cut(s) 447
PstI CTGCAG 1 cut(s) 459
RigI GGCCGGCC 1 cut(s) 190
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SacII CCGCGG 2 cut(s) 147, 248
SapI GCTCTTC 1 cut(s) 554
SaqAI TTAA 1 cut(s) 369
Sau3AI GATC 3 cut(s) 140, 207, 540
Sau96I GGNCC 1 cut(s) 447
ScrFI CCNGG 4 cut(s) 214, 226, 272, 508
SetI ASST 9 cut(s) 56, 130, 197, 222, 260, 276, 296, 357, 456
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 455
Sfr303I CCGCGG 2 cut(s) 147, 248
SfuI TTCGAA 1 cut(s) 494
SgrBI CCGCGG 2 cut(s) 147, 248
SinI GGWCC 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 437, 518
SmoI CTYRAG 2 cut(s) 437, 518
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 212, 224, 270, 506
StyI CCWWGG 2 cut(s) 96, 501
TaiI ACGT 1 cut(s) 296
TaqI TCGA 4 cut(s) 15, 105, 297, 494
TauI GCSGC 7 cut(s) 48, 95, 113, 116, 119, 247, 567
TfiI GAWTC 2 cut(s) 481, 511
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseI GCWGC 3 cut(s) 24, 241, 454
VpaK11BI GGWCC 1 cut(s) 447
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.