Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

12049913 .. 12050389

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCTGCACAATTGACTTCCGCTGCCTAGACGAAGGCTTCGGTGGCAAAACCTACAAGCGCAACTGGAACCCCGAAGCCGCCGCCGCCGACGAAGACGCCGCCAAGGAAATCGACACAGCCTACCGACTTCCGGCGAAGCGATCCGCGGTGTCCTCCTCGGACAAACAAGTCTTTGGCCGGCCGAGCTACGACGTCGTGATCGCCGGGAAGGTCTCCGGGCGGAAGTGGAAGCAGCCGCGGAAGCAGAGGTCATCGGCGGTTCAGGTGAGCCGGAAGGGGACGACGTTTGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAGAGGAACAAGGAGGAGAAGAGGAGGAAGGGCCTGAGGGAGAAGAAGAAGAAGGAGAATATTCTCAAGACTTGGACCAAGCTGCAGATTATTTCCAAAAAAAGGGCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

158

Amino Acids

18.25

Weight (kDa)

10.27

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cgr1	PF03879	70 - 141	5.8e-06	Cgr1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	198
AccII	CGCG	2 cut(s)	149, 241
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	178, 182
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	2 cut(s)	99, 195
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	133, 465
AluBI	AGCT	3 cut(s)	189, 349, 445
AluI	AGCT	3 cut(s)	189, 349, 445
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	4 cut(s)	3, 178, 182, 394
ApeKI	GCWGC	3 cut(s)	24, 235, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	394, 438
AsuC2I	CCSGG	2 cut(s)	208, 220
AsuHPI	GGTGA	2 cut(s)	280, 328
AvaII	GGWCC	1 cut(s)	438
AxyI	CCTNAGG	1 cut(s)	398
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	11, 247, 432
BcnI	CCSGG	2 cut(s)	208, 220
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	29, 471
BfmI	CTRYAG	1 cut(s)	446
BisI	GCNGC	8 cut(s)	25, 81, 84, 87, 102, 236, 239, 446
BlsI	GCNGC	8 cut(s)	26, 82, 85, 88, 103, 237, 240, 447
Bme1390I	CCNGG	2 cut(s)	208, 220
Bme18I	GGWCC	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	394, 438
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	208, 220
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	208, 220
BsaHI	GRCGYC	2 cut(s)	99, 195
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	4 cut(s)	105, 147, 159, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 465
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	398
BseDI	CCNNGG	4 cut(s)	105, 147, 159, 239
BseLI	CCNNNNNNNGG	2 cut(s)	133, 465
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	4 cut(s)	148, 308, 392, 400
BseX3I	CGGCCG	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	11, 247, 432
Bsh1236I	CGCG	2 cut(s)	149, 241
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	4 cut(s)	5, 180, 184, 396
BsiEI	CGRYCG	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	134, 181, 207, 219, 274
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	133, 465
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	4 cut(s)	5, 180, 184, 396
Bso31I	GGTCTC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	143, 201
BspANI	GGCC	4 cut(s)	5, 180, 184, 396
BspCNI	CTCAG	1 cut(s)	390
BspFNI	CGCG	2 cut(s)	149, 241
BspLI	GGNNCC	1 cut(s)	71
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	4 cut(s)	105, 147, 159, 239
BssMI	GATC	2 cut(s)	143, 201
BssNI	GRCGYC	2 cut(s)	99, 195
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	377
BstACI	GRCGYC	2 cut(s)	99, 195
BstC8I	GCNNGC	2 cut(s)	7, 182
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	2 cut(s)	147, 239
BstFNI	CGCG	2 cut(s)	149, 241
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	146, 204
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	143, 201
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 86, 186, 244
BstSCI	CCNGG	2 cut(s)	206, 218
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	2 cut(s)	149, 241
BstV1I	GCAGC	3 cut(s)	11, 247, 432
BstV2I	GAAGAC	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	182
Bsu36I	CCTNAGG	1 cut(s)	398
BsuRI	GGCC	4 cut(s)	5, 180, 184, 396
BtgI	CCRYGG	2 cut(s)	147, 239
Cac8I	GCNNGC	2 cut(s)	7, 182
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	394, 438
Cfr42I	CCGCGG	2 cut(s)	150, 242
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	328
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	2 cut(s)	145, 203
DpnII	GATC	2 cut(s)	143, 201
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	2 cut(s)	178, 182
EagI	CGGCCG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
EciI	GGCGGA	2 cut(s)	238, 359
EclXI	CGGCCG	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	438
Eco52I	CGGCCG	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaqI	GGGAC	1 cut(s)	295
Fnu4HI	GCNGC	8 cut(s)	25, 81, 84, 87, 102, 236, 239, 446
FseI	GGCCGGCC	1 cut(s)	184
Fsp4HI	GCNGC	8 cut(s)	25, 81, 84, 87, 102, 236, 239, 446
FspBI	CTAG	2 cut(s)	29, 471
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	8 cut(s)	25, 81, 84, 87, 102, 236, 239, 446
HaeIII	GGCC	4 cut(s)	5, 180, 184, 396
HapII	CCGG	5 cut(s)	134, 181, 207, 219, 274
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	2 cut(s)	99, 195
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	5 cut(s)	134, 181, 207, 219, 274
HphI	GGTGA	2 cut(s)	280, 328
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	199, 430
Hpy99I	CGWCG	4 cut(s)	95, 197, 200, 289
HpyAV	CCTTC	7 cut(s)	29, 205, 271, 316, 346, 385, 409
HpyCH4IV	ACGT	2 cut(s)	195, 287
HpyCH4V	TGCA	2 cut(s)	9, 448
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 86, 186, 244
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	195, 287
Hsp92I	GRCGYC	2 cut(s)	99, 195
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	180
KroNI	GCCGGC	1 cut(s)	182
KspI	CCGCGG	2 cut(s)	150, 242
Kzo9I	GATC	2 cut(s)	143, 201
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	19, 52, 147, 194, 220, 232, 251, 287, 410
Lsp1109I	GCAGC	3 cut(s)	11, 247, 432
MaeI	CTAG	2 cut(s)	29, 471
MaeII	ACGT	2 cut(s)	195, 287
MalI	GATC	2 cut(s)	145, 203
MboI	GATC	2 cut(s)	143, 201
MboII	GAAGA	7 cut(s)	107, 316, 331, 394, 418, 421, 424
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	1 cut(s)	12
MroNI	GCCGGC	1 cut(s)	180
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	3 cut(s)	24, 149, 241
MspI	CCGG	5 cut(s)	134, 181, 207, 219, 274
MspR9I	CCNGG	2 cut(s)	208, 220
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	2 cut(s)	149, 241
MwoI	GCNNNNNNNGC	4 cut(s)	45, 86, 186, 244
NaeI	GCCGGC	1 cut(s)	182
NciI	CCSGG	2 cut(s)	208, 220
NdeII	GATC	2 cut(s)	143, 201
NgoMIV	GCCGGC	1 cut(s)	180
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	210
PdiI	GCCGGC	1 cut(s)	182
PkrI	GCNGC	8 cut(s)	26, 82, 85, 88, 103, 237, 240, 447
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	394, 438
PstI	CTGCAG	1 cut(s)	450
RigI	GGCCGGCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacII	CCGCGG	2 cut(s)	150, 242
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	8 cut(s)	25, 81, 84, 87, 102, 236, 239, 446
Sau3AI	GATC	2 cut(s)	143, 201
Sau96I	GGNCC	2 cut(s)	394, 438
ScrFI	CCNGG	2 cut(s)	208, 220
SfcI	CTRYAG	1 cut(s)	446
Sfr303I	CCGCGG	2 cut(s)	150, 242
SgrBI	CCGCGG	2 cut(s)	150, 242
SinI	GGWCC	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	12
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	2 cut(s)	29, 471
StyD4I	CCNGG	2 cut(s)	206, 218
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	2 cut(s)	198, 290
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	12
TauI	GCSGC	5 cut(s)	83, 86, 89, 104, 241
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	3 cut(s)	24, 235, 445
VpaK11BI	GGWCC	1 cut(s)	438
XspI	CTAG	2 cut(s)	29, 471
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.