Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

60137660 .. 60138007

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG287200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCTGCACAATCGACTTCCGCTGCCTAGACAAAGGCTTCGGCGGCAAAACCTACAAGCGCAAGCAGAACCCCCAAGCCGCTGACGACGACGAAGATGCCGCCATGGAAATCGACGCCACCTACCCACCTCCGGCGAAGCGATCTGTGGTGTCCTTCTCGGACAATCCGGACAAACCAGTCGTGATCGCCGGGAAGGTCTCCGGGCGAAAGTGGAAGCAGACGCGGAAGCAGAGGTCGTCGGCGGTTCAAGTGAGTCGGAAGGGGACGACATTCGAGGAGAGGGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

115

Amino Acids

12.54

Weight (kDa)

5.59

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	7 cut(s)	22, 45, 81, 102, 226, 245, 327
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	205
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	2 cut(s)	193, 205
AsuHPI	GGTGA	1 cut(s)	311
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BbvI	GCAGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BcnI	CCSGG	2 cut(s)	193, 205
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	4 cut(s)	25, 46, 81, 102
BlsI	GCNGC	4 cut(s)	26, 47, 82, 103
Bme1390I	CCNGG	2 cut(s)	193, 205
BmrFI	CCNGG	2 cut(s)	193, 205
BmsI	GCATC	1 cut(s)	88
BpuMI	CCSGG	2 cut(s)	193, 205
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	4 cut(s)	134, 170, 192, 204
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	143, 186
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	7 cut(s)	22, 45, 81, 102, 226, 245, 327
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	143, 186
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	7, 65
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	146, 189
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	143, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 338
BstSCI	CCNGG	2 cut(s)	191, 203
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	7, 65
CfoI	GCGC	1 cut(s)	63
CseI	GACGC	2 cut(s)	125, 232
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	4 cut(s)	5, 39, 80, 332
CviKI_1	RGCY	4 cut(s)	5, 39, 80, 332
CviQI	GTAC	1 cut(s)	311
DpnI	GATC	2 cut(s)	145, 188
DpnII	GATC	2 cut(s)	143, 186
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	25, 46, 81, 102
Fsp4HI	GCNGC	4 cut(s)	25, 46, 81, 102
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	4 cut(s)	25, 46, 81, 102
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	134, 170, 192, 204
HgaI	GACGC	2 cut(s)	125, 232
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	4 cut(s)	134, 170, 192, 204
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	2 cut(s)	163, 261
Hpy188III	TCNNGA	2 cut(s)	170, 184
Hpy99I	CGWCG	4 cut(s)	92, 95, 119, 244
HpyAV	CCTTC	5 cut(s)	166, 190, 256, 299, 329
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 338
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	143, 186
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	19, 147, 183, 192, 205, 217
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	29
MalI	GATC	2 cut(s)	145, 188
MboI	GATC	2 cut(s)	143, 186
MboII	GAAGA	3 cut(s)	107, 299, 314
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	4 cut(s)	141, 228, 271, 276
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	1 cut(s)	346
MspA1I	CMGCKG	2 cut(s)	24, 83
MspI	CCGG	4 cut(s)	134, 170, 192, 204
MspR9I	CCNGG	2 cut(s)	193, 205
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	45, 338
NciI	CCSGG	2 cut(s)	193, 205
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	143, 186
NlaIII	CATG	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	26, 47, 82, 103
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	4 cut(s)	25, 46, 81, 102
Sau3AI	GATC	2 cut(s)	143, 186
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	193, 205
SetI	ASST	6 cut(s)	56, 125, 133, 201, 239, 334
SfaNI	GCATC	1 cut(s)	88
SsiI	CCGC	7 cut(s)	22, 45, 81, 102, 226, 245, 327
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	191, 203
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	3 cut(s)	15, 114, 276
TauI	GCSGC	3 cut(s)	48, 83, 104
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TseI	GCWGC	1 cut(s)	24
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.