Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

554773 .. 555138

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000148.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ctggaaccccgaagccccgccgacgacgaagacgctgccatggaaatcgacgcagcctacccacgtccggcgaagcgatccgcggtgtcctccacggacaatccggacaaacaagtctttggtcggccgagcttcgacgtcgtgatcgccgggaaggtctccgggcggaagtggaagcagccgcggaagcagaggtcatcggccgttcaggtgagccggaaggggacgacgtttgaggagagggagaagaacaagtcggtgaagaaggcgtacaaggagagaatggcggagctgaagggggagattaagaggaacaaggaggagaagaggaaggagaatattctcaagacttggaccaagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

121

Amino Acids

13.88

Weight (kDa)

10.03

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AatII	GACGTC	1 cut(s)	141
AccII	CGCG	2 cut(s)	83, 184
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	7 cut(s)	18, 81, 83, 166, 182, 184, 287
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	2 cut(s)	125, 201
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	65
AluBI	AGCT	2 cut(s)	132, 292
AluI	AGCT	2 cut(s)	132, 292
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	2 cut(s)	125, 201
ApeKI	GCWGC	3 cut(s)	35, 53, 178
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	2 cut(s)	151, 163
AsuHPI	GGTGA	2 cut(s)	223, 271
AvaII	GGWCC	1 cut(s)	354
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	22, 65, 190
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BcnI	CCSGG	2 cut(s)	151, 163
BcoDI	GTCTC	1 cut(s)	163
BisI	GCNGC	4 cut(s)	36, 54, 179, 182
BlsI	GCNGC	4 cut(s)	37, 55, 180, 183
Bme1390I	CCNGG	2 cut(s)	151, 163
Bme18I	GGWCC	1 cut(s)	354
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	151, 163
BpiI	GAAGAC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	151, 163
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	4 cut(s)	39, 81, 93, 182
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseAI	TCCGGA	1 cut(s)	103
BseDI	CCNNGG	4 cut(s)	39, 81, 93, 182
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseRI	GAGGAG	2 cut(s)	251, 335
BseX3I	CGGCCG	2 cut(s)	125, 201
BseXI	GCAGC	3 cut(s)	22, 65, 190
Bsh1236I	CGCG	2 cut(s)	83, 184
Bsh1285I	CGRYCG	2 cut(s)	128, 204
BshFI	GGCC	2 cut(s)	127, 203
BsiEI	CGRYCG	2 cut(s)	128, 204
BsiSI	CCGG	5 cut(s)	68, 104, 150, 162, 217
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	127, 203
Bso31I	GGTCTC	1 cut(s)	163
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	77, 144
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	7 cut(s)	18, 81, 83, 166, 182, 184, 287
BspANI	GGCC	2 cut(s)	127, 203
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	2 cut(s)	83, 184
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	163
BssECI	CCNNGG	4 cut(s)	39, 81, 93, 182
BssMI	GATC	2 cut(s)	77, 144
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	138
BstDSI	CCRYGG	4 cut(s)	39, 81, 93, 182
BstFNI	CGCG	2 cut(s)	83, 184
BstKTI	GATC	2 cut(s)	80, 147
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	77, 144
BstMCI	CGRYCG	2 cut(s)	128, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	149, 161
BstUI	CGCG	2 cut(s)	83, 184
BstV1I	GCAGC	3 cut(s)	22, 65, 190
BstV2I	GAAGAC	1 cut(s)	36
BstZI	CGGCCG	2 cut(s)	125, 201
BsuRI	GGCC	2 cut(s)	127, 203
BtgI	CCRYGG	4 cut(s)	39, 81, 93, 182
BtrI	CACGTC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	354
Cfr42I	CCGCGG	2 cut(s)	84, 185
CseI	GACGC	2 cut(s)	41, 59
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	8 cut(s)	15, 56, 127, 132, 181, 203, 216, 292
CviKI_1	RGCY	8 cut(s)	15, 56, 127, 132, 181, 203, 216, 292
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	2 cut(s)	79, 146
DpnII	GATC	2 cut(s)	77, 144
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	2 cut(s)	125, 201
EagI	CGGCCG	2 cut(s)	125, 201
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	2 cut(s)	181, 302
EclXI	CGGCCG	2 cut(s)	125, 201
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	354
Eco52I	CGGCCG	2 cut(s)	125, 201
Eco57I	CTGAAG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	36, 54, 179, 182
Fsp4HI	GCNGC	4 cut(s)	36, 54, 179, 182
GluI	GCNGC	4 cut(s)	36, 54, 179, 182
HaeIII	GGCC	2 cut(s)	127, 203
HapII	CCGG	5 cut(s)	68, 104, 150, 162, 217
HgaI	GACGC	2 cut(s)	41, 59
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	43
HpaII	CCGG	5 cut(s)	68, 104, 150, 162, 217
HphI	GGTGA	2 cut(s)	223, 271
Hpy188III	TCNNGA	3 cut(s)	104, 142, 346
Hpy99I	CGWCG	6 cut(s)	26, 29, 53, 140, 143, 232
HpyAV	CCTTC	5 cut(s)	148, 214, 259, 289, 325
HpyCH4IV	ACGT	3 cut(s)	64, 138, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpySE526I	ACGT	3 cut(s)	64, 138, 230
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	103
KspI	CCGCGG	2 cut(s)	84, 185
Kzo9I	GATC	2 cut(s)	77, 144
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	6 cut(s)	81, 117, 163, 175, 194, 230
Lsp1109I	GCAGC	3 cut(s)	22, 65, 190
MaeII	ACGT	3 cut(s)	64, 138, 230
MalI	GATC	2 cut(s)	79, 146
MboI	GATC	2 cut(s)	77, 144
MboII	GAAGA	4 cut(s)	41, 259, 274, 337
MnlI	CCTC	7 cut(s)	100, 186, 229, 234, 303, 313, 321
MroI	TCCGGA	1 cut(s)	103
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	2 cut(s)	83, 184
MspI	CCGG	5 cut(s)	68, 104, 150, 162, 217
MspR9I	CCNGG	2 cut(s)	151, 163
MvnI	CGCG	2 cut(s)	83, 184
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	2 cut(s)	151, 163
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	77, 144
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	153
PkrI	GCNGC	4 cut(s)	37, 55, 180, 183
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	354
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacII	CCGCGG	2 cut(s)	84, 185
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	4 cut(s)	36, 54, 179, 182
Sau3AI	GATC	2 cut(s)	77, 144
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	151, 163
SetI	ASST	8 cut(s)	67, 134, 141, 159, 197, 213, 233, 294
Sfr303I	CCGCGG	2 cut(s)	84, 185
SgrBI	CCGCGG	2 cut(s)	84, 185
SinI	GGWCC	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SsiI	CCGC	7 cut(s)	18, 81, 83, 166, 182, 184, 287
SspI	AATATT	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	149, 161
StyI	CCWWGG	1 cut(s)	39
TaiI	ACGT	3 cut(s)	67, 141, 233
TaqI	TCGA	2 cut(s)	48, 135
TauI	GCSGC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseI	GCWGC	3 cut(s)	35, 53, 178
TspGWI	ACGGA	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	354
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.