Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

27297686 .. 27298471

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0248800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTTAGAAGGCAAGGCCGTGATTGTTGAGACTGATATGCTTCAAAACATGCAGCAGAATGCAGTTGACTTGGCATCAAAAGCCCTAGATTTCTTCGATGTAACCGAAGCCACTGAGATAGGCCGCTTCATTAAGAAGGATTTTGACAGTACGTATGGACCTGGATGGCAGTGTATTGTAGGAACAGATTTTGGTTCGTTTGTTACGCATTGTCACGGTTGTTTTATCTACTTTTGCATTGGCAGCCTAGCAGTTTTACTCTTCAAGGGATCTGCAGGTCCAGATCAAACTCAGGCAAACCACTGTTCTCCCCTAGAGGCAGTAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

110

Amino Acids

11.96

Weight (kDa)

4.73

Isoelectric Point (pI)

15.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	5 - 89	6.2e-33	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	277
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	44, 265
AjnI	CCWGG	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	2 cut(s)	15, 121
ApeKI	GCWGC	2 cut(s)	52, 243
AspS9I	GGNCC	2 cut(s)	158, 278
AvaII	GGWCC	2 cut(s)	158, 278
BbvI	GCAGC	2 cut(s)	64, 255
BccI	CCATC	1 cut(s)	159
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	3 cut(s)	86, 248, 314
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	3 cut(s)	53, 124, 244
BlsI	GCNGC	3 cut(s)	54, 125, 245
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	158, 278
BmgT120I	GGNCC	2 cut(s)	158, 278
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	170
BseMII	CTCAG	2 cut(s)	105, 305
BseXI	GCAGC	2 cut(s)	64, 255
BshFI	GGCC	2 cut(s)	17, 123
BsmAI	GTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	17, 123
Bsp143I	GATC	2 cut(s)	269, 283
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	17, 123
BspCNI	CTCAG	2 cut(s)	106, 304
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	277
BssMI	GATC	2 cut(s)	269, 283
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	149, 218, 305
Bst6I	CTCTTC	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	114, 291
BstF5I	GGATG	1 cut(s)	170
BstKTI	GATC	2 cut(s)	272, 286
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	2 cut(s)	269, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 243, 326
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	273
BstSNI	TACGTA	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	64, 255
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	17, 123
BtsCI	GGATG	1 cut(s)	170
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	3 cut(s)	111, 176, 301
BveI	ACCTGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	158, 278
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	2 cut(s)	49, 330
CviJI	RGCY	5 cut(s)	17, 83, 110, 123, 246
CviKI_1	RGCY	5 cut(s)	17, 83, 110, 123, 246
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	2 cut(s)	114, 291
DpnI	GATC	2 cut(s)	271, 285
DpnII	GATC	2 cut(s)	269, 283
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco105I	TACGTA	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	158, 278
EcoRII	CCWGG	1 cut(s)	160
FaeI	CATG	2 cut(s)	52, 333
FaiI	YATR	4 cut(s)	38, 50, 156, 331
FatI	CATG	2 cut(s)	48, 329
Fnu4HI	GCNGC	3 cut(s)	53, 124, 244
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	53, 124, 244
FspBI	CTAG	3 cut(s)	86, 248, 314
GluI	GCNGC	3 cut(s)	53, 124, 244
HaeIII	GGCC	2 cut(s)	17, 123
Hin1II	CATG	2 cut(s)	52, 333
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	3 cut(s)	149, 218, 305
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	52, 62, 237, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 243, 326
HpyF3I	CTNAG	2 cut(s)	114, 291
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	52, 333
Kzo9I	GATC	2 cut(s)	269, 283
LpnPI	CCDG	5 cut(s)	147, 174, 261, 278, 294
Lsp1109I	GCAGC	2 cut(s)	64, 255
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	3 cut(s)	86, 248, 314
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	3 cut(s)	100, 202, 212
MalI	GATC	2 cut(s)	271, 285
MboI	GATC	2 cut(s)	269, 283
MboII	GAAGA	2 cut(s)	85, 253
MflI	RGATCY	1 cut(s)	269
MnlI	CCTC	1 cut(s)	310
MseI	TTAA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	80, 243, 326
NdeII	GATC	2 cut(s)	269, 283
NlaIII	CATG	2 cut(s)	52, 333
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	54, 125, 245
Ppu21I	YACGTR	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	158, 278
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	53, 124, 244
Sau3AI	GATC	2 cut(s)	269, 283
Sau96I	GGNCC	2 cut(s)	158, 278
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	3 cut(s)	155, 163, 280
SfaNI	GCATC	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	2 cut(s)	158, 278
SnaBI	TACGTA	1 cut(s)	153
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	3 cut(s)	86, 248, 314
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	3 cut(s)	149, 218, 305
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	3 cut(s)	118, 176, 308
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	52, 243
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	118
TspRI	CASTG	3 cut(s)	118, 176, 308
VpaK11BI	GGWCC	2 cut(s)	158, 278
XceI	RCATGY	1 cut(s)	52
XspI	CTAG	3 cut(s)	86, 248, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.