Rmu_sc0020614.1_g000001

Cgr1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020614.1
OG0001180
Physical Location & Seq
Reverse (-)
2 .. 390
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020614.1_g000001.1.cds

Sequence Viewer

Length: 389 bp
atggcctgcacaattgacttccactgcctagacgaaggcttcagtggcaaaacctacaagcgcaactggaaccccgaagccgccgccaacgacaaagacgccgccatggaaatcgacgcagcctacccacgtccggcgaagcgatccgcggtgtcctcctcggacaatccagacaaacaagtctttggtcggccgagctacgacgtcgtgatcgccgggaatgtctccgggcggaagtggaagcagccacggaagcagaggtcatcggaggttcaggtgagccggaaggggacgacgtttgaggaaagtgagaagaacaagtcggtgaagaaggcgtacaaggagagaatggcggagctgaagggggagattaagaggaacaaggagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cgr1

Protein Analysis

129

Amino Acids

14.59

Weight (kDa)

9.54

Isoelectric Point (pI)

62.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 207
AccII CGCG 1 cut(s) 149
AciI CCGC 7 cut(s) 81, 84, 102, 147, 149, 232, 353
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 191
AcuI CTGAAG 2 cut(s) 25, 380
AcyI GRCGYC 2 cut(s) 99, 204
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 133
AjiI CACGTC 1 cut(s) 131
AluBI AGCT 2 cut(s) 198, 358
AluI AGCT 2 cut(s) 198, 358
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 1 cut(s) 138
AoxI GGCC 2 cut(s) 3, 191
ApeKI GCWGC 2 cut(s) 119, 244
AspLEI GCGC 1 cut(s) 63
AsuC2I CCSGG 2 cut(s) 217, 229
AsuHPI GGTGA 2 cut(s) 289, 337
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbvI GCAGC 2 cut(s) 131, 256
BcnI CCSGG 2 cut(s) 217, 229
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 29
BisI GCNGC 5 cut(s) 81, 84, 102, 120, 245
BlsI GCNGC 5 cut(s) 82, 85, 103, 121, 246
Bme1390I CCNGG 2 cut(s) 217, 229
BmgBI CACGTC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 217, 229
BpuMI CCSGG 2 cut(s) 217, 229
BsaHI GRCGYC 2 cut(s) 99, 204
BsaJI CCNNGG 4 cut(s) 105, 147, 159, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 4 cut(s) 105, 147, 159, 248
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 148
BseX3I CGGCCG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 131, 256
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 2 cut(s) 5, 193
BsiEI CGRYCG 1 cut(s) 194
BsiSI CCGG 4 cut(s) 134, 216, 228, 283
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 2 cut(s) 5, 193
Bsp143I GATC 2 cut(s) 143, 210
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 7 cut(s) 81, 84, 102, 147, 149, 232, 353
BspANI GGCC 2 cut(s) 5, 193
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 105, 147, 159, 248
BssMI GATC 2 cut(s) 143, 210
BssNI GRCGYC 2 cut(s) 99, 204
BssT1I CCWWGG 1 cut(s) 105
BstACI GRCGYC 2 cut(s) 99, 204
BstC8I GCNNGC 1 cut(s) 7
BstDSI CCRYGG 3 cut(s) 105, 147, 248
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 146, 213
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 2 cut(s) 143, 210
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 2 cut(s) 45, 253
BstSCI CCNGG 2 cut(s) 215, 227
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 131, 256
BstZI CGGCCG 1 cut(s) 191
BsuRI GGCC 2 cut(s) 5, 193
BtgI CCRYGG 3 cut(s) 105, 147, 248
BtrI CACGTC 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 22, 49
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 63
Cfr42I CCGCGG 1 cut(s) 150
CseI GACGC 2 cut(s) 107, 125
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 106
CviJI RGCY 9 cut(s) 5, 39, 80, 122, 193, 198, 247, 282, 358
CviKI_1 RGCY 9 cut(s) 5, 39, 80, 122, 193, 198, 247, 282, 358
CviQI GTAC 1 cut(s) 337
DpnI GATC 2 cut(s) 145, 212
DpnII GATC 2 cut(s) 143, 210
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 1 cut(s) 191
EagI CGGCCG 1 cut(s) 191
EciI GGCGGA 2 cut(s) 247, 368
EclXI CGGCCG 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 191
Eco57I CTGAAG 2 cut(s) 25, 380
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 109
FaiI YATR 1 cut(s) 107
FaqI GGGAC 1 cut(s) 304
FatI CATG 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 81, 84, 102, 120, 245
Fsp4HI GCNGC 5 cut(s) 81, 84, 102, 120, 245
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 62
GluI GCNGC 5 cut(s) 81, 84, 102, 120, 245
HaeIII GGCC 2 cut(s) 5, 193
HapII CCGG 4 cut(s) 134, 216, 228, 283
HgaI GACGC 2 cut(s) 107, 125
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 2 cut(s) 99, 204
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HpaII CCGG 4 cut(s) 134, 216, 228, 283
HphI GGTGA 2 cut(s) 289, 337
Hpy188I TCNGA 2 cut(s) 163, 268
Hpy188III TCNNGA 2 cut(s) 170, 208
Hpy99I CGWCG 4 cut(s) 119, 206, 209, 298
HpyAV CCTTC 4 cut(s) 29, 280, 325, 355
HpyCH4IV ACGT 3 cut(s) 130, 204, 296
HpyCH4V TGCA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 253
HpySE526I ACGT 3 cut(s) 130, 204, 296
Hsp92I GRCGYC 2 cut(s) 99, 204
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 61
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 2 cut(s) 143, 210
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 8 cut(s) 19, 52, 147, 183, 229, 241, 260, 296
Lsp1109I GCAGC 2 cut(s) 131, 256
MaeI CTAG 1 cut(s) 29
MaeII ACGT 3 cut(s) 130, 204, 296
MalI GATC 2 cut(s) 145, 212
MboI GATC 2 cut(s) 143, 210
MboII GAAGA 2 cut(s) 325, 340
MfeI CAATTG 1 cut(s) 12
MluCI AATT 1 cut(s) 12
MnlI CCTC 7 cut(s) 166, 169, 252, 262, 295, 369, 379
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 4 cut(s) 134, 216, 228, 283
MspR9I CCNGG 2 cut(s) 217, 229
MunI CAATTG 1 cut(s) 12
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 45, 253
NciI CCSGG 2 cut(s) 217, 229
NcoI CCATGG 1 cut(s) 105
NdeII GATC 2 cut(s) 143, 210
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 219
PkrI GCNGC 5 cut(s) 82, 85, 103, 121, 246
PspN4I GGNNCC 1 cut(s) 71
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 5 cut(s) 81, 84, 102, 120, 245
Sau3AI GATC 2 cut(s) 143, 210
ScrFI CCNGG 2 cut(s) 217, 229
SetI ASST 9 cut(s) 56, 133, 200, 207, 263, 273, 279, 299, 360
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
Sse9I AATT 1 cut(s) 12
SsiI CCGC 7 cut(s) 81, 84, 102, 147, 149, 232, 353
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 215, 227
StyI CCWWGG 1 cut(s) 105
TaiI ACGT 3 cut(s) 133, 207, 299
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 12
TauI GCSGC 3 cut(s) 83, 86, 104
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 29, 49
TseI GCWGC 2 cut(s) 119, 244
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 2 cut(s) 29, 49
XspI CTAG 1 cut(s) 29
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.