Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002194.1

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

97535 .. 99567

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002194.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggcttgcacaatcgactttcgctgcttagacaaaggcttcagcggcaaaacctacaagcgcaagcggaaccccgaagccgccgccgacgaccaagatgccgccatggaaatcgacgccacctacccacctccggcgaagcgatctttggtgtccttctcgaacaatccggacaaaccagtcgtgatcgccgggaaggtctccgagcgaaagtggaagcagccgaggaagcagagatgttgggtcgggctagataacctgggtaccattgtgatagttttggaaatttgggtacagaaattcggagtcggacataggttggacccgattccggagtggagctttggagcttcccgaacctctgacgaacaaaaccgacaaagcccagacccgaacttggacggtggagcttcggagcttcccggatctctaacgaacaaaaccggcgtcgcctctgtccagatcggctctgacgaaataccttattctacatccgtcgttctacgtcttctgcactacgatccaaaaccgaacgcaatagtcgcctctatcttggagatggaagactcttcaggggtcttggaggccaccagaaatggaggaattgtagagaaaggttgggcaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

209

Amino Acids

22.87

Weight (kDa)

6.16

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	263
AccIII	TCCGGA	2 cut(s)	169, 331
AciI	CCGC	5 cut(s)	45, 67, 81, 84, 102
AclWI	GGATC	2 cut(s)	433, 515
AcsI	RAATTY	2 cut(s)	285, 299
AcuI	CTGAAG	2 cut(s)	25, 555
AcyI	GRCGYC	2 cut(s)	117, 447
AfaI	GTAC	2 cut(s)	265, 294
AfiI	CCNNNNNNNGG	3 cut(s)	133, 331, 397
AjnI	CCWGG	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	4 cut(s)	342, 350, 410, 418
AluI	AGCT	4 cut(s)	342, 350, 410, 418
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	2 cut(s)	433, 515
Aor13HI	TCCGGA	2 cut(s)	169, 331
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	24, 220
ApoI	RAATTY	2 cut(s)	285, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
Asp718I	GGTACC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	2 cut(s)	193, 423
AvaII	GGWCC	1 cut(s)	322
BaeI	ACNNNNGTAYC	4 cut(s)	247, 255, 280, 288
BanI	GGYRCC	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	500, 570
BbvI	GCAGC	2 cut(s)	11, 232
BccI	CCATC	1 cut(s)	553
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	2 cut(s)	193, 423
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	6 cut(s)	25, 46, 81, 84, 102, 221
BlsI	GCNGC	6 cut(s)	26, 47, 82, 85, 103, 222
Bme1390I	CCNGG	3 cut(s)	193, 260, 423
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	71, 265, 324
BmrFI	CCNGG	3 cut(s)	193, 260, 423
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	2 cut(s)	500, 570
BpuMI	CCSGG	2 cut(s)	193, 423
BsaHI	GRCGYC	2 cut(s)	117, 447
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	105, 224, 259
BsaWI	WCCGGW	2 cut(s)	169, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 331, 397
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	2 cut(s)	169, 331
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	3 cut(s)	105, 224, 259
BseGI	GGATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	3 cut(s)	133, 331, 397
BseNI	ACTGG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	11, 232
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	6 cut(s)	134, 170, 192, 332, 423, 444
BslI	CCNNNNNNNGG	3 cut(s)	133, 331, 397
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	587
Bso31I	GGTCTC	1 cut(s)	205
Bsp13I	TCCGGA	2 cut(s)	169, 331
Bsp143I	GATC	5 cut(s)	143, 186, 425, 462, 520
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	5 cut(s)	45, 67, 81, 84, 102
BspANI	GGCC	1 cut(s)	587
BspEI	TCCGGA	2 cut(s)	169, 331
BspLI	GGNNCC	3 cut(s)	71, 265, 324
BspPI	GGATC	2 cut(s)	433, 515
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	105, 224, 259
BssMI	GATC	5 cut(s)	143, 186, 425, 462, 520
BssNI	GRCGYC	2 cut(s)	117, 447
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	574
BstACI	GRCGYC	2 cut(s)	117, 447
BstC8I	GCNNGC	2 cut(s)	7, 65
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	5 cut(s)	146, 189, 428, 465, 523
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	5 cut(s)	143, 186, 425, 462, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 229, 542
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	191, 258, 421
BstV1I	GCAGC	2 cut(s)	11, 232
BstV2I	GAAGAC	2 cut(s)	500, 570
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	7, 65
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	2 cut(s)	125, 436
Csp6I	GTAC	2 cut(s)	264, 293
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	2 cut(s)	264, 293
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	5 cut(s)	145, 188, 427, 464, 522
DpnII	GATC	5 cut(s)	143, 186, 425, 462, 520
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	25, 555
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	2 cut(s)	107, 315
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	6 cut(s)	25, 46, 81, 84, 102, 221
FokI	GGATG	1 cut(s)	478
Fsp4HI	GCNGC	6 cut(s)	25, 46, 81, 84, 102, 221
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	6 cut(s)	25, 46, 81, 84, 102, 221
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	6 cut(s)	134, 170, 192, 332, 423, 444
HgaI	GACGC	2 cut(s)	125, 436
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	2 cut(s)	117, 447
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	306, 328, 566
HpaII	CCGG	6 cut(s)	134, 170, 192, 332, 423, 444
Hpy188I	TCNGA	6 cut(s)	205, 305, 311, 364, 415, 472
Hpy188III	TCNNGA	6 cut(s)	160, 170, 184, 332, 354, 460
Hpy99I	CGWCG	4 cut(s)	92, 119, 452, 500
HpyAV	CCTTC	2 cut(s)	166, 190
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	2 cut(s)	9, 514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 229, 542
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	505
Hsp92I	GRCGYC	2 cut(s)	117, 447
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	2 cut(s)	169, 331
KpnI	GGTACC	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	143, 186, 425, 462, 520
LmnI	GCTCC	4 cut(s)	339, 347, 407, 415
Lsp1109I	GCAGC	2 cut(s)	11, 232
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	505
MalI	GATC	5 cut(s)	145, 188, 427, 464, 522
MboI	GATC	5 cut(s)	143, 186, 425, 462, 520
MboII	GAAGA	3 cut(s)	500, 561, 575
MflI	RGATCY	1 cut(s)	425
MluCI	AATT	4 cut(s)	285, 299, 603, 624
MlyI	GAGTC	2 cut(s)	315, 560
MmeI	TCCRAC	2 cut(s)	289, 300
MnlI	CCTC	7 cut(s)	141, 219, 370, 463, 556, 577, 593
MroI	TCCGGA	2 cut(s)	169, 331
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	6 cut(s)	134, 170, 192, 332, 423, 444
MspR9I	CCNGG	3 cut(s)	193, 260, 423
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	45, 229, 542
NciI	CCSGG	2 cut(s)	193, 423
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	5 cut(s)	143, 186, 425, 462, 520
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	71, 265, 324
NmeAIII	GCCGAG	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	6 cut(s)	26, 47, 82, 85, 103, 222
PleI	GAGTC	2 cut(s)	314, 560
PpsI	GAGTC	2 cut(s)	314, 560
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	71, 265, 324
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	2 cut(s)	265, 294
RsaNI	GTAC	2 cut(s)	264, 293
SatI	GCNGC	6 cut(s)	25, 46, 81, 84, 102, 221
Sau3AI	GATC	5 cut(s)	143, 186, 425, 462, 520
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	315, 560
ScrFI	CCNGG	3 cut(s)	193, 260, 423
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	4 cut(s)	285, 299, 603, 624
SsiI	CCGC	5 cut(s)	45, 67, 81, 84, 102
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	191, 258, 421
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	3 cut(s)	15, 114, 161
TasI	AATT	4 cut(s)	285, 299, 603, 624
TauI	GCSGC	4 cut(s)	48, 83, 86, 104
TfiI	GAWTC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	24, 220
TspGWI	ACGGA	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	2 cut(s)	285, 299
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.