Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

57266691 .. 57267047

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26486

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAAATTGACGCCCCCTACCCACCTCCGGCGGAGCGATCCGTGGTGTCCTCCTCGGACAATTCGGAAAAACCAGTCTTCGGCCAGCCAAGCTACGACCGCGTGATCGCATGGAAGGTCTCCTGGCGAAAGTGGAAGCAGCCGCTGAAGCAGAGGTCGTCGGCGGTTCAGGTGAGCCGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGTGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAAAGGAACAAGGAGGAGAAGAGGAGGAAGAGGGAGGAGAGGGAGAAGAAGAAGAAGGAGAATATGCTCAAGACTGGGACCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

118

Amino Acids

14.01

Weight (kDa)

10.16

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	102
AciI	CCGC	5 cut(s)	32, 100, 143, 164, 248
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	167, 275
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	28, 80
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	93, 253, 352
AluI	AGCT	3 cut(s)	93, 253, 352
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	184, 232
AvaII	GGWCC	1 cut(s)	345
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	2 cut(s)	140, 143
BlsI	GCNGC	2 cut(s)	141, 144
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	42, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 80
Bse1I	ACTGG	2 cut(s)	74, 346
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	42, 54
BseLI	CCNNNNNNNGG	2 cut(s)	28, 80
BseNI	ACTGG	2 cut(s)	74, 346
BseRI	GAGGAG	5 cut(s)	43, 212, 296, 304, 317
BseXI	GCAGC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	29, 178
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	28, 80
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	38, 105
BspACI	CCGC	5 cut(s)	32, 100, 143, 164, 248
BspANI	GGCC	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	74, 346
BssECI	CCNNGG	2 cut(s)	42, 54
BssMI	GATC	2 cut(s)	38, 105
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	281, 290
BstACI	GRCGYC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	41, 108
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	38, 105
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 99, 148
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	353
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	111
CviJI	RGCY	7 cut(s)	84, 88, 93, 142, 177, 253, 352
CviKI_1	RGCY	7 cut(s)	84, 88, 93, 142, 177, 253, 352
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	2 cut(s)	40, 107
DpnII	GATC	2 cut(s)	38, 105
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	281, 290
EarI	CTCTTC	2 cut(s)	281, 290
EciI	GGCGGA	2 cut(s)	47, 263
Eco31I	GGTCTC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	345
Eco57I	CTGAAG	2 cut(s)	167, 275
EcoRII	CCWGG	1 cut(s)	122
FaeI	CATG	1 cut(s)	114
FaiI	YATR	2 cut(s)	112, 332
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	140, 143
Fsp4HI	GCNGC	2 cut(s)	140, 143
GluI	GCNGC	2 cut(s)	140, 143
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	29, 178
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	114
HpaII	CCGG	2 cut(s)	29, 178
HphI	GGTGA	2 cut(s)	184, 232
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	58, 67
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	2 cut(s)	163, 193
HpyAV	CCTTC	5 cut(s)	109, 175, 220, 250, 316
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 99, 148
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	38, 105
LmnI	GCTCC	2 cut(s)	34, 250
LpnPI	CCDG	8 cut(s)	42, 87, 98, 109, 136, 155, 191, 327
Lsp1109I	GCAGC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	191
MalI	GATC	2 cut(s)	40, 107
MboI	GATC	2 cut(s)	38, 105
MboII	GAAGA	8 cut(s)	70, 220, 235, 298, 307, 325, 328, 331
MluCI	AATT	2 cut(s)	6, 61
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	2 cut(s)	29, 178
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	90, 99, 148
NdeII	GATC	2 cut(s)	38, 105
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	141, 144
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	2 cut(s)	140, 143
Sau3AI	GATC	2 cut(s)	38, 105
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	9 cut(s)	28, 95, 120, 158, 174, 194, 231, 255, 354
SfcI	CTRYAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	6, 61
SsiI	CCGC	5 cut(s)	32, 100, 143, 164, 248
StyD4I	CCNGG	1 cut(s)	122
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	6, 61
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseI	GCWGC	1 cut(s)	139
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.