Rh6DG152300

Cgr1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001180
Physical Location & Seq
Reverse (-)
22221456 .. 22229976
8521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG152300.1

Sequence Viewer

Length: 330 bp
ATGGAAATCGACGCCACCTACCCACCTCCGGCAAAGCGATATGTGGTGTCCTTCTCGGACAATCCGGACAAACCAGTCGTGATCGCCGGGAAGGTCTCCGAGGGAAAGTGGAAGCAGCCGCGGAAGCAGAGGTCGTCGGTGGTTCAGGTGAGTCAGAAGGGAACGACGTTCAAGGAGAGGGAGAAGAACAACCAAGAAGCTCAGATTCTATTACCAAATTTAACCTTCATTGAAGAGGAGCAGATATCCATCTTTGCTGTTTCACAGTATCAGACCATTGGTGGGAAAAAGGAAGAGGAGAGATCGAAGATTTTGGTCGATTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cgr1

Protein Analysis

109

Amino Acids

12.44

Weight (kDa)

7.9

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 1 cut(s) 121
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 2 cut(s) 119, 121
AcsI RAATTY 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 28, 282
AgsI TTSAA 2 cut(s) 172, 233
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 100
Aor13HI TCCGGA 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 160
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 257
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 100
BisI GCNGC 2 cut(s) 116, 119
BlsI GCNGC 2 cut(s) 117, 120
Bme1390I CCNGG 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 99, 119
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 282
Bse1I ACTGG 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 248
BseAI TCCGGA 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 99, 119
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 2 cut(s) 28, 282
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 251, 311
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 121
BsiSI CCGG 3 cut(s) 29, 65, 87
BslI CCNNNNNNNGG 2 cut(s) 28, 282
BsmAI GTCTC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 100
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 81, 302
BspACI CCGC 2 cut(s) 119, 121
BspCNI CTCAG 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 99, 119
BssMI GATC 2 cut(s) 81, 302
BssNI GRCGYC 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 228, 288
BstACI GRCGYC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 121
BstKTI GATC 2 cut(s) 84, 305
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 2 cut(s) 81, 302
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 86
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 119
Cfr42I CCGCGG 1 cut(s) 122
CseI GACGC 1 cut(s) 20
CviJI RGCY 2 cut(s) 118, 200
CviKI_1 RGCY 2 cut(s) 118, 200
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 83, 304
DpnII GATC 2 cut(s) 81, 302
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 228, 288
EarI CTCTTC 2 cut(s) 228, 288
Eco31I GGTCTC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 246
EcoRV GATATC 1 cut(s) 246
FaiI YATR 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 116, 119
Fsp4HI GCNGC 2 cut(s) 116, 119
GluI GCNGC 2 cut(s) 116, 119
HapII CCGG 3 cut(s) 29, 65, 87
HgaI GACGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 12
HinfI GANTC 2 cut(s) 151, 205
HpaII CCGG 3 cut(s) 29, 65, 87
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 5 cut(s) 58, 100, 156, 204, 273
Hpy188III TCNNGA 2 cut(s) 65, 79
Hpy99I CGWCG 3 cut(s) 14, 139, 169
HpyAV CCTTC 4 cut(s) 61, 85, 151, 235
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 64
KspI CCGCGG 1 cut(s) 122
Kzo9I GATC 2 cut(s) 81, 302
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 5 cut(s) 42, 78, 87, 100, 131
Lsp1109I GCAGC 1 cut(s) 127
MaeII ACGT 1 cut(s) 167
MalI GATC 2 cut(s) 83, 304
MboI GATC 2 cut(s) 81, 302
MboII GAAGA 4 cut(s) 196, 245, 305, 319
MluCI AATT 1 cut(s) 217
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 6 cut(s) 36, 94, 123, 171, 229, 289
MroI TCCGGA 1 cut(s) 64
MseI TTAA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 3 cut(s) 29, 65, 87
MspR9I CCNGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 88
NdeII GATC 2 cut(s) 81, 302
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 2 cut(s) 117, 120
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
SacII CCGCGG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 2 cut(s) 116, 119
Sau3AI GATC 2 cut(s) 81, 302
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 88
SetI ASST 8 cut(s) 20, 28, 96, 134, 150, 170, 202, 227
Sfr303I CCGCGG 1 cut(s) 122
SgrBI CCGCGG 1 cut(s) 122
Sse9I AATT 1 cut(s) 217
SsiI CCGC 2 cut(s) 119, 121
StyD4I CCNGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 1 cut(s) 170
TaqI TCGA 3 cut(s) 9, 305, 318
TasI AATT 1 cut(s) 217
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 217
XapI RAATTY 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.