Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007848.1

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

79190 .. 79609

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007848.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggcctgcacaattgacttccactgcctagacgaaggcttcggtggcaaaacctacaagcgcaagtggaaccccaaagccgccgccgacgacgaagatgccgccatggaaatcgacgcagcctacccacgtccggcgaagcgatccgcggtgtcctcctcagacaatccggacaaacaagtctttggccggccgagctacgacgtcgtgatcgccgggaaggtctccgggcggaagtggaagcagctgcggaagcagaggtcatcgacggttcaggtgagccggaaggggacgacgcttgaggagagggagaagaacaagtcggtgaagaaggcgtacaaggagagaatggcggagctgaagggggagattaagaggaacaaggaggagaagaggaggaagagcctgagggagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

139

Amino Acids

15.92

Weight (kDa)

9.94

Isoelectric Point (pI)

64.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	207
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	8 cut(s)	81, 84, 102, 147, 149, 232, 250, 353
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	187, 191
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	131
AluBI	AGCT	3 cut(s)	198, 247, 358
AluI	AGCT	3 cut(s)	198, 247, 358
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	3 cut(s)	3, 187, 191
ApeKI	GCWGC	3 cut(s)	119, 244, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	2 cut(s)	217, 229
AsuHPI	GGTGA	2 cut(s)	289, 337
AxyI	CCTNAGG	1 cut(s)	407
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbvI	GCAGC	3 cut(s)	131, 234, 256
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BcnI	CCSGG	2 cut(s)	217, 229
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	6 cut(s)	81, 84, 102, 120, 245, 248
BlsI	GCNGC	6 cut(s)	82, 85, 103, 121, 246, 249
Bme1390I	CCNGG	2 cut(s)	217, 229
BmgBI	CACGTC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	217, 229
BmsI	GCATC	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	217, 229
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	2 cut(s)	105, 147
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	189
Bse21I	CCTNAGG	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	105, 147
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	174, 398
BseRI	GAGGAG	4 cut(s)	148, 317, 401, 409
BseX3I	CGGCCG	1 cut(s)	191
BseXI	GCAGC	3 cut(s)	131, 234, 256
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	3 cut(s)	5, 189, 193
BsiEI	CGRYCG	1 cut(s)	194
BsiSI	CCGG	6 cut(s)	134, 170, 190, 216, 228, 283
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	5, 189, 193
Bso31I	GGTCTC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	143, 210
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	8 cut(s)	81, 84, 102, 147, 149, 232, 250, 353
BspANI	GGCC	3 cut(s)	5, 189, 193
BspCNI	CTCAG	2 cut(s)	173, 399
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	138
BspQI	GCTCTTC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	105, 147
BssMI	GATC	2 cut(s)	143, 210
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	386, 395
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	7, 191
BstDEI	CTNAG	2 cut(s)	160, 407
BstDSI	CCRYGG	2 cut(s)	105, 147
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	146, 213
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	143, 210
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 195, 253
BstSCI	CCNGG	2 cut(s)	215, 227
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	131, 234, 256
BstZI	CGGCCG	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	5, 189, 193
BtgI	CCRYGG	2 cut(s)	105, 147
BtrI	CACGTC	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	7, 191
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	189
Cfr42I	CCGCGG	1 cut(s)	150
CseI	GACGC	2 cut(s)	125, 304
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	160, 407
DpnI	GATC	2 cut(s)	145, 212
DpnII	GATC	2 cut(s)	143, 210
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	2 cut(s)	187, 191
EagI	CGGCCG	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	386, 395
EarI	CTCTTC	2 cut(s)	386, 395
EciI	GGCGGA	2 cut(s)	247, 368
EclXI	CGGCCG	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	380
Eco81I	CCTNAGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	6 cut(s)	81, 84, 102, 120, 245, 248
FseI	GGCCGGCC	1 cut(s)	193
Fsp4HI	GCNGC	6 cut(s)	81, 84, 102, 120, 245, 248
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	6 cut(s)	81, 84, 102, 120, 245, 248
HaeIII	GGCC	3 cut(s)	5, 189, 193
HapII	CCGG	6 cut(s)	134, 170, 190, 216, 228, 283
HgaI	GACGC	2 cut(s)	125, 304
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	6 cut(s)	134, 170, 190, 216, 228, 283
HphI	GGTGA	2 cut(s)	289, 337
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	170, 208
Hpy99I	CGWCG	7 cut(s)	92, 95, 119, 206, 209, 271, 298
HpyAV	CCTTC	5 cut(s)	29, 214, 280, 325, 355
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	130, 204
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 195, 253
HpyF3I	CTNAG	2 cut(s)	160, 407
HpySE526I	ACGT	2 cut(s)	130, 204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	189
KroNI	GCCGGC	1 cut(s)	191
KspI	CCGCGG	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	143, 210
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	8 cut(s)	19, 147, 183, 203, 229, 241, 260, 296
Lsp1109I	GCAGC	3 cut(s)	131, 234, 256
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	2 cut(s)	130, 204
MalI	GATC	2 cut(s)	145, 212
MboI	GATC	2 cut(s)	143, 210
MboII	GAAGA	5 cut(s)	107, 325, 340, 403, 412
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	189
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	2 cut(s)	149, 247
MspI	CCGG	6 cut(s)	134, 170, 190, 216, 228, 283
MspR9I	CCNGG	2 cut(s)	217, 229
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	45, 195, 253
NaeI	GCCGGC	1 cut(s)	191
NciI	CCSGG	2 cut(s)	217, 229
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	143, 210
NgoMIV	GCCGGC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	395
PdiI	GCCGGC	1 cut(s)	191
PkrI	GCNGC	6 cut(s)	82, 85, 103, 121, 246, 249
PspN4I	GGNNCC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	247
RigI	GGCCGGCC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacII	CCGCGG	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	6 cut(s)	81, 84, 102, 120, 245, 248
Sau3AI	GATC	2 cut(s)	143, 210
ScrFI	CCNGG	2 cut(s)	217, 229
SetI	ASST	9 cut(s)	56, 133, 200, 207, 225, 249, 263, 279, 360
SfaNI	GCATC	1 cut(s)	88
Sfr303I	CCGCGG	1 cut(s)	150
SgrBI	CCGCGG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	8 cut(s)	81, 84, 102, 147, 149, 232, 250, 353
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	215, 227
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	133, 207
TaqI	TCGA	2 cut(s)	114, 266
TasI	AATT	1 cut(s)	12
TauI	GCSGC	3 cut(s)	83, 86, 104
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	29
TseI	GCWGC	3 cut(s)	119, 244, 247
TspRI	CASTG	1 cut(s)	29
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.