Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005125.1

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

51854 .. 52345

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005125.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggactcaagaatagggctgggtaagcctagttttcactgtatggcttacacaattgacttccgctgcctagacaaaggcttcggcggcaaaacctacaagcgcaagaggaaccccgaagcctccgccgacgaccaagatgccgccatggaaatcgacgccacctacccacctccggcaaagcgatgtatggtgtccttctcggacaatccggacaaaccagtcatgatcgccgagaaggtctccgagctaaagtggaagcagccgcggaagcagaggtcatcggtggttcaggtgagtcagaagggaacgacgttcgaggagagggagaagaacaagttggtgaagaaggcgtacaaggagagaatggtggagctgaagggggagattaagaggaacaaggaggagaagaggaggaagagggaggaaatggagaagaagaagaaggagaatattcttccggaggagatgatcaagaggaacaataagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

163

Amino Acids

19.13

Weight (kDa)

9.74

Isoelectric Point (pI)

67.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccII	CGCG	1 cut(s)	268
AccIII	TCCGGA	2 cut(s)	211, 460
AciI	CCGC	6 cut(s)	64, 87, 126, 144, 266, 268
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	2 cut(s)	250, 376
AluI	AGCT	2 cut(s)	250, 376
Alw26I	GTCTC	1 cut(s)	247
Aor13HI	TCCGGA	2 cut(s)	211, 460
ApeKI	GCWGC	2 cut(s)	66, 262
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	307, 355
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BbvI	GCAGC	2 cut(s)	53, 274
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	30, 71
BisI	GCNGC	5 cut(s)	67, 88, 144, 263, 266
BlsI	GCNGC	5 cut(s)	68, 89, 145, 264, 267
BmiI	GGNNCC	1 cut(s)	113
BmsI	GCATC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	147, 266
BsaWI	WCCGGW	2 cut(s)	211, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	221
BseAI	TCCGGA	2 cut(s)	211, 460
BseDI	CCNNGG	2 cut(s)	147, 266
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	4 cut(s)	335, 419, 427, 479
BseXI	GCAGC	2 cut(s)	53, 274
BseYI	CCCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	176, 212, 461
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	247
Bsp13I	TCCGGA	2 cut(s)	211, 460
Bsp143I	GATC	2 cut(s)	228, 471
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	6 cut(s)	64, 87, 126, 144, 266, 268
BspEI	TCCGGA	2 cut(s)	211, 460
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	147, 266
BssMI	GATC	2 cut(s)	228, 471
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	404, 413
BstACI	GRCGYC	1 cut(s)	159
BstDSI	CCRYGG	2 cut(s)	147, 266
BstFNI	CGCG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	231, 474
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	2 cut(s)	228, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 87, 271
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	53, 274
BtgI	CCRYGG	2 cut(s)	147, 266
BtgZI	GCGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	37
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	105
Cfr42I	CCGCGG	1 cut(s)	269
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	148, 226
CviJI	RGCY	8 cut(s)	19, 28, 47, 81, 122, 250, 265, 376
CviKI_1	RGCY	8 cut(s)	19, 28, 47, 81, 122, 250, 265, 376
CviQI	GTAC	1 cut(s)	355
DpnI	GATC	2 cut(s)	230, 473
DpnII	GATC	2 cut(s)	228, 471
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	404, 413
EarI	CTCTTC	2 cut(s)	404, 413
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	151, 229
FaiI	YATR	4 cut(s)	44, 149, 191, 227
FatI	CATG	2 cut(s)	147, 225
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	5 cut(s)	67, 88, 144, 263, 266
Fsp4HI	GCNGC	5 cut(s)	67, 88, 144, 263, 266
FspBI	CTAG	2 cut(s)	30, 71
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	5 cut(s)	67, 88, 144, 263, 266
GsaI	CCCAGC	1 cut(s)	23
HapII	CCGG	3 cut(s)	176, 212, 461
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	151, 229
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	5, 298
HpaII	CCGG	3 cut(s)	176, 212, 461
HphI	GGTGA	2 cut(s)	307, 355
Hpy188I	TCNGA	3 cut(s)	205, 247, 303
Hpy188III	TCNNGA	5 cut(s)	9, 212, 226, 461, 475
Hpy99I	CGWCG	3 cut(s)	134, 161, 316
HpyAV	CCTTC	6 cut(s)	208, 232, 298, 343, 373, 439
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 87, 271
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	151, 229
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	2 cut(s)	211, 460
Ksp22I	TGATCA	1 cut(s)	471
KspI	CCGCGG	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	228, 471
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	6 cut(s)	5, 189, 225, 234, 278, 474
Lsp1109I	GCAGC	2 cut(s)	53, 274
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	30, 71
MaeII	ACGT	1 cut(s)	314
MalI	GATC	2 cut(s)	230, 473
MboI	GATC	2 cut(s)	228, 471
MboII	GAAGA	8 cut(s)	343, 358, 421, 430, 448, 449, 451, 454
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	307
MroI	TCCGGA	2 cut(s)	211, 460
MseI	TTAA	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	66, 268
MspI	CCGG	3 cut(s)	176, 212, 461
MunI	CAATTG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	25, 87, 271
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	228, 471
NlaIII	CATG	2 cut(s)	151, 229
NlaIV	GGNNCC	1 cut(s)	113
NmeAIII	GCCGAG	1 cut(s)	259
PagI	TCATGA	1 cut(s)	225
PkrI	GCNGC	5 cut(s)	68, 89, 145, 264, 267
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacII	CCGCGG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	67, 88, 144, 263, 266
Sau3AI	GATC	2 cut(s)	228, 471
SchI	GAGTC	1 cut(s)	307
SetI	ASST	9 cut(s)	98, 167, 175, 243, 252, 281, 297, 317, 378
SfaNI	GCATC	1 cut(s)	130
Sfr303I	CCGCGG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	6 cut(s)	64, 87, 126, 144, 266, 268
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	2 cut(s)	30, 71
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	156, 318
TasI	AATT	1 cut(s)	54
TauI	GCSGC	3 cut(s)	90, 146, 268
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	2 cut(s)	66, 262
TspRI	CASTG	1 cut(s)	44
XspI	CTAG	2 cut(s)	30, 71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.