Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

16809001 .. 16809495

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTTGCACAATTGACTTCCACTGCCTAGACAAAGGCTTCGGTGGCAAAACCTACAAGCGCAAGCAGAACCCCGAAGCCGCCGCCGACGACCAAGATGCCGCCATGGAAATCGACGCCACCTACCCACCTCGGGCGAAGCGATCTGTGGTGTCCTTCTCGGACAATCCGGACAAACCAGTCGTGATCGCCGGGAAGGTCTCCGAGCGAAAGTGGAAGCATCCGCGGAAGCAGAGGTCGTCGGTGGTTCAGGTGAGTGGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAACAAGTCGATGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGAAGATTAAGAGGAACAAGGAGGAGAATAGGAGGAAGAGGGAGGAAAGGGAGAAGAAGAAGAAGGAGAATATTCTTCCGGAGGAGATGATCAAGAGGAACAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

149

Amino Acids

17.35

Weight (kDa)

9.95

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	226
AccIII	TCCGGA	2 cut(s)	169, 418
AciI	CCGC	6 cut(s)	81, 84, 102, 224, 226, 329
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	132
Aor13HI	TCCGGA	2 cut(s)	169, 418
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	132
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BclI	TGATCA	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	3 cut(s)	81, 84, 102
BlsI	GCNGC	3 cut(s)	82, 85, 103
Bme1390I	CCNGG	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	2 cut(s)	88, 229
BpuMI	CCSGG	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	105, 131, 224
BsaWI	WCCGGW	2 cut(s)	169, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	2 cut(s)	169, 418
BseDI	CCNNGG	3 cut(s)	105, 131, 224
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	3 cut(s)	293, 377, 437
Bsh1236I	CGCG	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	170, 192, 419
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	132
Bsp13I	TCCGGA	2 cut(s)	169, 418
Bsp143I	GATC	3 cut(s)	143, 186, 429
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	6 cut(s)	81, 84, 102, 224, 226, 329
BspEI	TCCGGA	2 cut(s)	169, 418
BspFNI	CGCG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	105, 131, 224
BssMI	GATC	3 cut(s)	143, 186, 429
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	7, 65
BstDSI	CCRYGG	2 cut(s)	105, 224
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	146, 189, 432
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	3 cut(s)	143, 186, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	191
BstUI	CGCG	1 cut(s)	226
BtgI	CCRYGG	2 cut(s)	105, 224
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	7, 65
CfoI	GCGC	1 cut(s)	63
Cfr42I	CCGCGG	1 cut(s)	227
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	4 cut(s)	5, 39, 80, 334
CviKI_1	RGCY	4 cut(s)	5, 39, 80, 334
CviQI	GTAC	1 cut(s)	313
DpnI	GATC	3 cut(s)	145, 188, 431
DpnII	GATC	3 cut(s)	143, 186, 429
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	81, 84, 102
FokI	GGATG	1 cut(s)	207
Fsp4HI	GCNGC	3 cut(s)	81, 84, 102
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	3 cut(s)	81, 84, 102
HapII	CCGG	3 cut(s)	170, 192, 419
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	3 cut(s)	170, 192, 419
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	163, 205
Hpy188III	TCNNGA	4 cut(s)	170, 184, 419, 433
Hpy99I	CGWCG	4 cut(s)	92, 119, 244, 274
HpyAV	CCTTC	6 cut(s)	166, 190, 256, 301, 331, 397
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	2 cut(s)	169, 418
Ksp22I	TGATCA	1 cut(s)	429
KspI	CCGCGG	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	143, 186, 429
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	5 cut(s)	183, 192, 205, 236, 432
LweI	GCATC	2 cut(s)	88, 229
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	272
MalI	GATC	3 cut(s)	145, 188, 431
MboI	GATC	3 cut(s)	143, 186, 429
MboII	GAAGA	8 cut(s)	301, 316, 355, 388, 406, 407, 409, 412
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	1 cut(s)	12
MroI	TCCGGA	2 cut(s)	169, 418
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	3 cut(s)	170, 192, 419
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	143, 186, 429
NlaIII	CATG	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	82, 85, 103
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SacII	CCGCGG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	3 cut(s)	81, 84, 102
Sau3AI	GATC	3 cut(s)	143, 186, 429
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	8 cut(s)	56, 125, 133, 201, 239, 255, 275, 336
SfaNI	GCATC	2 cut(s)	88, 229
Sfr303I	CCGCGG	1 cut(s)	227
SgrBI	CCGCGG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	6 cut(s)	81, 84, 102, 224, 226, 329
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	3 cut(s)	114, 276, 299
TasI	AATT	1 cut(s)	12
TauI	GCSGC	3 cut(s)	83, 86, 104
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	29
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.