Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

35299204 .. 35300570

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG297300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGAAATTGACGCCACCTACCCACCTCCGACAAAGCGATCTGTGGTGTCCTTCTCGGACAATCCGGACAGACCAGTCGTGATCGCCGGGAAGGTCTCCGAGCGAAAGTGGAAGCAGCCGAGGAAGCAGAGGTCGTCGGTGGTTCAGGTGAGTCGGAAGGGGACGACACATTTAGAGTTTGAGTTTTTGACATCTACAGGACACCATCATCATAAGCCTTATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

75

Amino Acids

8.63

Weight (kDa)

9.92

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	100
Aor13HI	TCCGGA	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	65, 87
BslFI	GGGAC	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	100
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	38, 81
BspEI	TCCGGA	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	38, 81
BssNI	GRCGYC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	41, 84
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	38, 81
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	127
CseI	GACGC	1 cut(s)	20
CviJI	RGCY	2 cut(s)	118, 217
CviKI_1	RGCY	2 cut(s)	118, 217
DpnI	GATC	2 cut(s)	40, 83
DpnII	GATC	2 cut(s)	38, 81
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	100
FaiI	YATR	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
HapII	CCGG	2 cut(s)	65, 87
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	65, 87
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	30, 58, 100, 156
Hpy188III	TCNNGA	2 cut(s)	65, 79
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	61, 85, 151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
Hsp92I	GRCGYC	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	38, 81
LpnPI	CCDG	5 cut(s)	78, 87, 100, 131, 183
Lsp1109I	GCAGC	1 cut(s)	127
MalI	GATC	2 cut(s)	40, 83
MboI	GATC	2 cut(s)	38, 81
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	2 cut(s)	53, 134
MnlI	CCTC	3 cut(s)	36, 114, 123
MroI	TCCGGA	1 cut(s)	64
MspI	CCGG	2 cut(s)	65, 87
MspR9I	CCNGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	88
NdeII	GATC	2 cut(s)	38, 81
NmeAIII	GCCGAG	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	38, 81
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	5 cut(s)	20, 28, 96, 134, 150
SfcI	CTRYAG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	86
TasI	AATT	1 cut(s)	6
TseI	GCWGC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.