Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

205962 .. 206522

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgcagagatacagagagaggaagagagcaaagggactcaagaatagggctggtaagcctagttttcactgtatggcctacacaatcgacttccgttgcctagacgaaggcttcggcggcaaaacctacaagctcaagcggaaccccaaagccgccgccgccgacgaagatgccgccatggaaatcgacgccccctacccacctccggcaaagcgatccatggtgtcctcctcggacaatccggacaaaccagtcttcggccagccgagctacgacggcgtgatcgcatggaaggtctccgggcgaaagtggaagcagctgcggaagcagaggtcgtcggcggttcaggtgagccggaagggaacgacgttcgaggagagggagaagaacaagtcggtgaagaaagtgtacaaggagagaatggcggagctgaagggggagattaaaaggaacaaggaggagaagaggaggaagagggaggagagggagaagaagaagaaggagaatatgctcaagactgggaccaagctgcagattatttccaaccaagacgattcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

186

Amino Acids

21.59

Weight (kDa)

10.11

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	9 cut(s)	117, 139, 153, 156, 159, 174, 322, 341, 425
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	205, 257
AluBI	AGCT	5 cut(s)	133, 270, 319, 430, 529
AluI	AGCT	5 cut(s)	133, 270, 319, 430, 529
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	210
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	2 cut(s)	75, 259
ApeKI	GCWGC	3 cut(s)	316, 319, 529
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	361, 409
AvaII	GGWCC	1 cut(s)	522
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BbsI	GAAGAC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	306, 328, 516
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	60, 101
BfmI	CTRYAG	1 cut(s)	530
BisI	GCNGC	8 cut(s)	118, 153, 156, 159, 174, 317, 320, 530
BlsI	GCNGC	8 cut(s)	119, 154, 157, 160, 175, 318, 321, 531
Bme1390I	CCNGG	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	2 cut(s)	143, 523
BmrFI	CCNGG	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	247
BpuEI	CTTGAG	3 cut(s)	23, 119, 497
BpuMI	CCSGG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	177, 219, 231
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 257
Bse1I	ACTGG	2 cut(s)	251, 523
BseAI	TCCGGA	1 cut(s)	241
BseDI	CCNNGG	3 cut(s)	177, 219, 231
BseLI	CCNNNNNNNGG	2 cut(s)	205, 257
BseNI	ACTGG	2 cut(s)	251, 523
BseRI	GAGGAG	5 cut(s)	220, 389, 473, 481, 494
BseXI	GCAGC	3 cut(s)	306, 328, 516
BshFI	GGCC	2 cut(s)	77, 261
BsiSI	CCGG	4 cut(s)	206, 242, 300, 355
BslFI	GGGAC	2 cut(s)	48, 535
BslI	CCNNNNNNNGG	2 cut(s)	205, 257
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	48, 535
BsnI	GGCC	2 cut(s)	77, 261
Bso31I	GGTCTC	1 cut(s)	301
Bsp13I	TCCGGA	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	215, 282
Bsp19I	CCATGG	2 cut(s)	177, 219
BspACI	CCGC	9 cut(s)	117, 139, 153, 156, 159, 174, 322, 341, 425
BspANI	GGCC	2 cut(s)	77, 261
BspEI	TCCGGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	143, 523
BspMAI	CTGCAG	1 cut(s)	534
BspPI	GGATC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	301
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	251, 523
BssECI	CCNNGG	3 cut(s)	177, 219, 231
BssMI	GATC	2 cut(s)	215, 282
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	177, 219
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	3 cut(s)	17, 458, 467
BstACI	GRCGYC	1 cut(s)	189
BstAUI	TGTACA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	263
BstDSI	CCRYGG	2 cut(s)	177, 219
BstKTI	GATC	2 cut(s)	218, 285
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	215, 282
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 158, 267, 276, 325
BstSCI	CCNGG	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	530
BstV1I	GCAGC	3 cut(s)	306, 328, 516
BstV2I	GAAGAC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	77, 261
BtgI	CCRYGG	2 cut(s)	177, 219
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	522
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	178, 220, 288
CviQI	GTAC	1 cut(s)	409
DpnI	GATC	2 cut(s)	217, 284
DpnII	GATC	2 cut(s)	215, 282
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	17, 458, 467
EarI	CTCTTC	3 cut(s)	17, 458, 467
EciI	GGCGGA	1 cut(s)	440
Eco130I	CCWWGG	2 cut(s)	177, 219
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	177, 219
ErhI	CCWWGG	2 cut(s)	177, 219
FaeI	CATG	3 cut(s)	181, 223, 291
FaiI	YATR	6 cut(s)	74, 179, 221, 289, 509, 559
FaqI	GGGAC	2 cut(s)	48, 535
FatI	CATG	3 cut(s)	177, 219, 287
Fnu4HI	GCNGC	8 cut(s)	118, 153, 156, 159, 174, 317, 320, 530
Fsp4HI	GCNGC	8 cut(s)	118, 153, 156, 159, 174, 317, 320, 530
FspBI	CTAG	2 cut(s)	60, 101
GluI	GCNGC	8 cut(s)	118, 153, 156, 159, 174, 317, 320, 530
HaeIII	GGCC	2 cut(s)	77, 261
HapII	CCGG	4 cut(s)	206, 242, 300, 355
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	181, 223, 291
HinfI	GANTC	2 cut(s)	36, 554
HpaII	CCGG	4 cut(s)	206, 242, 300, 355
HphI	GGTGA	2 cut(s)	361, 409
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	3 cut(s)	40, 242, 514
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	5 cut(s)	167, 191, 278, 340, 370
HpyAV	CCTTC	5 cut(s)	101, 286, 352, 427, 493
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	4, 532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 158, 267, 276, 325
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	181, 223, 291
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	215, 282
LmnI	GCTCC	1 cut(s)	427
LpnPI	CCDG	9 cut(s)	36, 219, 255, 264, 275, 313, 332, 368, 504
Lsp1109I	GCAGC	3 cut(s)	306, 328, 516
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	60, 101
MaeII	ACGT	1 cut(s)	368
MalI	GATC	2 cut(s)	217, 284
MboI	GATC	2 cut(s)	215, 282
MlyI	GAGTC	1 cut(s)	30
MroI	TCCGGA	1 cut(s)	241
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	4 cut(s)	206, 242, 300, 355
MspR9I	CCNGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	5 cut(s)	117, 158, 267, 276, 325
NciI	CCSGG	1 cut(s)	301
NcoI	CCATGG	2 cut(s)	177, 219
NdeII	GATC	2 cut(s)	215, 282
NlaIII	CATG	3 cut(s)	181, 223, 291
NlaIV	GGNNCC	2 cut(s)	143, 523
NmeAIII	GCCGAG	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	8 cut(s)	119, 154, 157, 160, 175, 318, 321, 531
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	143, 523
PspPI	GGNCC	1 cut(s)	522
PstI	CTGCAG	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	8 cut(s)	118, 153, 156, 159, 174, 317, 320, 530
Sau3AI	GATC	2 cut(s)	215, 282
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	301
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	1 cut(s)	522
SmlI	CTYRAG	3 cut(s)	38, 134, 512
SmoI	CTYRAG	3 cut(s)	38, 134, 512
SsiI	CCGC	9 cut(s)	117, 139, 153, 156, 159, 174, 322, 341, 425
SspMI	CTAG	2 cut(s)	60, 101
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	177, 219
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	3 cut(s)	87, 186, 372
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	5 cut(s)	120, 155, 158, 161, 176
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	3 cut(s)	316, 319, 529
TspDTI	ATGAA	1 cut(s)	546
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	522
XspI	CTAG	2 cut(s)	60, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.