Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

3779492 .. 3780984

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG036500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCCTGCACAATTGACTTCAGCTGCCTAGACGAAGGCTTTGGTGGCAAAACCTACAAGCGCAAGCGGAACCCTGAAGCCGCCGCCGACGACGAAGATGCTGCCATGGAAATCGACGCCGCCTACCCACCTCCGACAAAGCGATCCGCGATGTCCTCCTCGGACAATCCGGACAAACCAGTCTTTAGCCAGCCGAGCTACGACGTTGTGATCGCCGGGAAGGTCTCCGGGCGGAAGTGGAAGCAGCCTCGGAAGCAGAGGTCGTCGGCGGTTCAGGTGAGCCGGAAGGGGACAACGTTCGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAGAGGAACAAGGAGGAGGAAGAGGGAGGAGAGGGAGAAGAAGAAGAAGGAGAATATTCTCAAGACTGGGACCAAGCTGCAGATTATTTCCAAAAAAAGGGCTGGGTAAGTGGCTCCAAATCTGGAGGCATGGACGGCGGCGACGGCTCTGGTGTCAGAAACAACATACTGAGGTTCTACATCGACGACGCTCCAGGCTTGAAGACCCGCCCACCGTCGTCCTCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

200

Amino Acids

22.13

Weight (kDa)

5.83

Isoelectric Point (pI)

73.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cgr1	PF03879	73 - 130	2.6e-06	Cgr1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	169
AclI	AACGTT	1 cut(s)	296
AclWI	GGATC	1 cut(s)	138
AcuI	CTGAAG	3 cut(s)	4, 96, 380
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	4 cut(s)	24, 198, 358, 449
AluI	AGCT	4 cut(s)	24, 198, 358, 449
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	24, 101, 244, 449
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	442
AsuC2I	CCSGG	2 cut(s)	217, 229
AsuHPI	GGTGA	2 cut(s)	289, 337
AvaII	GGWCC	1 cut(s)	442
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	4 cut(s)	11, 88, 256, 436
BceAI	ACGGC	2 cut(s)	523, 532
BcgI	CGANNNNNNTGC	4 cut(s)	80, 83, 114, 117
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	2 cut(s)	217, 229
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 245, 450, 511
BlsI	GCNGC	8 cut(s)	26, 82, 85, 103, 121, 246, 451, 512
Bme1390I	CCNGG	3 cut(s)	217, 229, 567
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	71, 443, 487
BmrFI	CCNGG	3 cut(s)	217, 229, 567
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	2 cut(s)	516, 549
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	2 cut(s)	217, 229
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	3 cut(s)	105, 159, 248
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	179, 443
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	3 cut(s)	105, 159, 248
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	2 cut(s)	179, 443
BseRI	GAGGAG	4 cut(s)	148, 317, 401, 414
BseXI	GCAGC	4 cut(s)	11, 88, 256, 436
BseYI	CCCAGC	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	4 cut(s)	170, 216, 228, 283
BslFI	GGGAC	2 cut(s)	304, 455
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	2 cut(s)	304, 455
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	143, 210
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	534
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	599
BspLI	GGNNCC	3 cut(s)	71, 443, 487
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	179, 443
BssECI	CCNNGG	3 cut(s)	105, 159, 248
BssMI	GATC	2 cut(s)	143, 210
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	588
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	7, 65, 191
BstDEI	CTNAG	1 cut(s)	542
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	146, 213
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	143, 210
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 195, 253, 507, 516
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	3 cut(s)	215, 227, 565
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	4 cut(s)	11, 88, 256, 436
BstV2I	GAAGAC	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	164
Cac8I	GCNNGC	3 cut(s)	7, 65, 191
CciI	TCATGA	1 cut(s)	599
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	442
CseI	GACGC	2 cut(s)	125, 569
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	3 cut(s)	106, 502, 600
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	2 cut(s)	145, 212
DpnII	GATC	2 cut(s)	143, 210
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
EciI	GGCGGA	2 cut(s)	247, 368
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	3 cut(s)	4, 96, 380
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	109, 505, 603
FaiI	YATR	4 cut(s)	107, 503, 539, 601
FaqI	GGGAC	2 cut(s)	304, 455
FatI	CATG	3 cut(s)	105, 501, 599
FauI	CCCGC	1 cut(s)	587
Fnu4HI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 245, 450, 511
Fsp4HI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 245, 450, 511
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 245, 450, 511
GsaI	CCCAGC	1 cut(s)	478
GsuI	CTGGAG	2 cut(s)	516, 549
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	170, 216, 228, 283
HgaI	GACGC	2 cut(s)	125, 569
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	109, 505, 603
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	4 cut(s)	170, 216, 228, 283
HphI	GGTGA	2 cut(s)	289, 337
Hpy188I	TCNGA	4 cut(s)	135, 163, 252, 530
Hpy188III	TCNNGA	4 cut(s)	170, 434, 495, 600
Hpy99I	CGWCG	9 cut(s)	92, 95, 119, 206, 268, 518, 560, 563, 592
HpyAV	CCTTC	6 cut(s)	29, 214, 280, 325, 355, 413
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4IV	ACGT	2 cut(s)	204, 296
HpyCH4V	TGCA	2 cut(s)	9, 452
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 195, 253, 507, 516
HpyF3I	CTNAG	1 cut(s)	542
HpySE526I	ACGT	2 cut(s)	204, 296
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	109, 505, 603
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	143, 210
LmnI	GCTCC	3 cut(s)	355, 491, 568
Lsp1109I	GCAGC	4 cut(s)	11, 88, 256, 436
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	2 cut(s)	204, 296
MalI	GATC	2 cut(s)	145, 212
MboI	GATC	2 cut(s)	143, 210
MboII	GAAGA	8 cut(s)	107, 325, 340, 404, 422, 425, 428, 586
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	158
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	4 cut(s)	170, 216, 228, 283
MspR9I	CCNGG	3 cut(s)	217, 229, 567
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	45, 195, 253, 507, 516
NciI	CCSGG	2 cut(s)	217, 229
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	143, 210
NlaIII	CATG	3 cut(s)	109, 505, 603
NlaIV	GGNNCC	3 cut(s)	71, 443, 487
NmeAIII	GCCGAG	1 cut(s)	219
PagI	TCATGA	1 cut(s)	599
PkrI	GCNGC	8 cut(s)	26, 82, 85, 103, 121, 246, 451, 512
Psp1406I	AACGTT	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	3 cut(s)	71, 443, 487
PspPI	GGNCC	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 245, 450, 511
Sau3AI	GATC	2 cut(s)	143, 210
Sau96I	GGNCC	1 cut(s)	442
ScrFI	CCNGG	3 cut(s)	217, 229, 567
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	442
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	1 cut(s)	12
SspI	AATATT	1 cut(s)	428
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	215, 227, 565
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	588
TaiI	ACGT	2 cut(s)	207, 299
TaqI	TCGA	3 cut(s)	114, 300, 555
TasI	AATT	1 cut(s)	12
TauI	GCSGC	4 cut(s)	83, 86, 122, 513
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	4 cut(s)	24, 101, 244, 449
VpaK11BI	GGWCC	1 cut(s)	442
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.