Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00770

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

6733 .. 7564

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCCTGCACAATCGACTTCCGCTGCCTAGACGAAGGCTTCGGCGGCAAAACCTACAAGCGCAAGCGGAACCCCGAAGCCGCCGCCGACGAAGAAGATGCCGCCATGGAAATCGACGCCGCCGCCTACCCACCTCCGGCGAAGCGATCGGCGGTGTCCTCCTCGGACAATCCGGACAAGCCGGTCTTCGGCCGGCCGAGCTACGACGGCGTGATCGCGGGGAAGGTGTCCGGGCGGAAGTGGAAGCAGCCGCGGAAGCAGAGGTCGTCGGCGCTGCAGGTGAGCCGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGAGAAGAGGAGAAGAGGAGAGGGAGAAAGAAGAAGAAGGAAATATCCTCAAGACTGGGACCAAGCTGCAGATTATTTCCAACCCCAAGACGATTCAGAGGATTTCGAAAACCAAGGCCAGGAATCAACTCAAGCCTGTTCCCGAGGAGATGATCAAGAGGAACAACAAAGAGCGGCCTTTTGCTTACGGAGTAGTCAGTCTTTTGCTTTTGTTTACTGCTCTTTTTTCATTTTCCTGTTTTTGTTTTATGGTAGGATTTTTGATCCTTGCTTTTGGGGACAATGAGGAGGTGTTGTGTTATGTGATAATGAAATCGAATATATGCTACTCAGAGTTGCTGTGTTCAAATGTTGTGGGCTTACTTTCAAATAATGTTATAGTAATCTGGGATAAACCTGTGGCATTGAGTGTGGATTATTGCTTCGAAAAGCCTTCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

266

Amino Acids

30.05

Weight (kDa)

9.22

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
AasI	GACNNNNNNGTC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	532
AccII	CGCG	2 cut(s)	218, 253
AccIII	TCCGGA	1 cut(s)	172
AclWI	GGATC	1 cut(s)	616
AcoI	YGGCCR	2 cut(s)	190, 194
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	3 cut(s)	136, 188, 477
AgsI	TTSAA	2 cut(s)	705, 726
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	2 cut(s)	201, 424
AluI	AGCT	2 cut(s)	201, 424
AlwI	GGATC	1 cut(s)	616
Ama87I	CYCGRG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	5 cut(s)	3, 190, 194, 474, 533
ApeKI	GCWGC	4 cut(s)	24, 247, 274, 424
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	2 cut(s)	63, 274
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	292, 340
AsuII	TTCGAA	2 cut(s)	464, 783
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	417
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	11, 259, 261, 411
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	478
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	232
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	275, 425
BfoI	RGCGCY	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	232, 478
Bme18I	GGWCC	1 cut(s)	417
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	71, 418
BmrFI	CCNGG	2 cut(s)	232, 478
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	178
Bpu14I	TTCGAA	2 cut(s)	464, 783
BpuEI	CTTGAG	2 cut(s)	392, 473
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	5 cut(s)	105, 162, 251, 471, 501
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 188, 477
Bse118I	RCCGGY	2 cut(s)	181, 192
Bse1I	ACTGG	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	5 cut(s)	105, 162, 251, 471, 501
BseLI	CCNNNNNNNGG	3 cut(s)	136, 188, 477
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	6 cut(s)	151, 320, 381, 389, 518, 659
BseX3I	CGGCCG	2 cut(s)	190, 194
BseXI	GCAGC	4 cut(s)	11, 259, 261, 411
Bsh1236I	CGCG	2 cut(s)	218, 253
Bsh1285I	CGRYCG	3 cut(s)	149, 193, 197
BshFI	GGCC	5 cut(s)	5, 192, 196, 476, 535
BsiEI	CGRYCG	3 cut(s)	149, 193, 197
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	6 cut(s)	137, 173, 182, 193, 231, 286
BslFI	GGGAC	3 cut(s)	307, 430, 650
BslI	CCNNNNNNNGG	3 cut(s)	136, 188, 477
BsmFI	GGGAC	3 cut(s)	307, 430, 650
BsnI	GGCC	5 cut(s)	5, 192, 196, 476, 535
BsoBI	CYCGRG	1 cut(s)	500
Bsp119I	TTCGAA	2 cut(s)	464, 783
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	146, 213, 510, 621
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	5 cut(s)	5, 192, 196, 476, 535
BspCNI	CTCAG	1 cut(s)	701
BspEI	TCCGGA	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	218, 253
BspLI	GGNNCC	2 cut(s)	71, 418
BspMAI	CTGCAG	2 cut(s)	279, 429
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	616
BspT104I	TTCGAA	2 cut(s)	464, 783
BsrBI	CCGCTC	1 cut(s)	532
BsrFI	RCCGGY	2 cut(s)	181, 192
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	2 cut(s)	181, 192
BssECI	CCNNGG	5 cut(s)	105, 162, 251, 471, 501
BssMI	GATC	4 cut(s)	146, 213, 510, 621
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	105, 471
Bst2UI	CCWGG	1 cut(s)	478
Bst6I	CTCTTC	2 cut(s)	358, 366
BstACI	GRCGYC	1 cut(s)	117
BstBI	TTCGAA	2 cut(s)	464, 783
BstC8I	GCNNGC	3 cut(s)	7, 65, 194
BstDEI	CTNAG	1 cut(s)	688
BstDSI	CCRYGG	2 cut(s)	105, 251
BstFNI	CGCG	2 cut(s)	218, 253
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	63, 274
BstKTI	GATC	4 cut(s)	149, 216, 513, 624
BstMBI	GATC	4 cut(s)	146, 213, 510, 621
BstMCI	CGRYCG	3 cut(s)	149, 193, 197
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 198, 207, 256
BstNI	CCWGG	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	230, 476
BstSFI	CTRYAG	2 cut(s)	275, 425
BstUI	CGCG	2 cut(s)	218, 253
BstV1I	GCAGC	4 cut(s)	11, 259, 261, 411
BstV2I	GAAGAC	1 cut(s)	178
BstZI	CGGCCG	2 cut(s)	190, 194
BsuRI	GGCC	5 cut(s)	5, 192, 196, 476, 535
BtgI	CCRYGG	2 cut(s)	105, 251
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	7, 65, 194
CfoI	GCGC	2 cut(s)	63, 274
Cfr10I	RCCGGY	2 cut(s)	181, 192
Cfr13I	GGNCC	1 cut(s)	417
Cfr42I	CCGCGG	1 cut(s)	254
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	340
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	688
DpnI	GATC	4 cut(s)	148, 215, 512, 623
DpnII	GATC	4 cut(s)	146, 213, 510, 621
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	2 cut(s)	190, 194
EagI	CGGCCG	2 cut(s)	190, 194
Eam1104I	CTCTTC	2 cut(s)	358, 366
EarI	CTCTTC	2 cut(s)	358, 366
EciI	GGCGGA	2 cut(s)	250, 371
EclXI	CGGCCG	2 cut(s)	190, 194
Eco130I	CCWWGG	2 cut(s)	105, 471
Eco47I	GGWCC	1 cut(s)	417
Eco52I	CGGCCG	2 cut(s)	190, 194
Eco88I	CYCGRG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	2 cut(s)	105, 471
ErhI	CCWWGG	2 cut(s)	105, 471
FaeI	CATG	1 cut(s)	109
FaiI	YATR	6 cut(s)	107, 608, 660, 680, 682, 737
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	3 cut(s)	307, 430, 650
FatI	CATG	1 cut(s)	105
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	510
FseI	GGCCGGCC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	2 cut(s)	62, 273
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	5 cut(s)	5, 192, 196, 476, 535
HapII	CCGG	6 cut(s)	137, 173, 182, 193, 231, 286
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	63, 274
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	2 cut(s)	61, 272
HinP1I	GCGC	2 cut(s)	61, 272
HinfI	GANTC	2 cut(s)	451, 481
HpaII	CCGG	6 cut(s)	137, 173, 182, 193, 231, 286
HphI	GGTGA	2 cut(s)	292, 340
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	3 cut(s)	166, 456, 691
Hpy188III	TCNNGA	5 cut(s)	173, 409, 500, 514, 795
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	5 cut(s)	92, 119, 209, 271, 301
HpyAV	CCTTC	6 cut(s)	29, 217, 283, 328, 389, 801
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	9, 277, 427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 198, 207, 256
HpyF3I	CTNAG	1 cut(s)	688
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	2 cut(s)	61, 272
Kpn2I	TCCGGA	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	192
KroNI	GCCGGC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	510
KspI	CCGCGG	1 cut(s)	254
Kzo9I	GATC	4 cut(s)	146, 213, 510, 621
Lsp1109I	GCAGC	4 cut(s)	11, 259, 261, 411
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	299
MalI	GATC	4 cut(s)	148, 215, 512, 623
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	4 cut(s)	146, 213, 510, 621
MboII	GAAGA	9 cut(s)	104, 107, 178, 328, 343, 375, 383, 401, 404
MmeI	TCCRAC	1 cut(s)	462
MroI	TCCGGA	1 cut(s)	172
MroNI	GCCGGC	1 cut(s)	192
MspA1I	CMGCKG	2 cut(s)	24, 253
MspI	CCGG	6 cut(s)	137, 173, 182, 193, 231, 286
MspR9I	CCNGG	2 cut(s)	232, 478
MvaI	CCWGG	1 cut(s)	478
MvnI	CGCG	2 cut(s)	218, 253
MwoI	GCNNNNNNNGC	4 cut(s)	45, 198, 207, 256
NaeI	GCCGGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	4 cut(s)	146, 213, 510, 621
NgoMIV	GCCGGC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	71, 418
NmeAIII	GCCGAG	1 cut(s)	222
NspV	TTCGAA	2 cut(s)	464, 783
PaqCI	CACCTGC	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	451, 481
Ple19I	CGATCG	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	71, 418
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	2 cut(s)	279, 429
PvuI	CGATCG	1 cut(s)	149
RigI	GGCCGGCC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SacII	CCGCGG	1 cut(s)	254
Sau3AI	GATC	4 cut(s)	146, 213, 510, 621
Sau96I	GGNCC	1 cut(s)	417
ScrFI	CCNGG	2 cut(s)	232, 478
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	2 cut(s)	275, 425
Sfr303I	CCGCGG	1 cut(s)	254
SfuI	TTCGAA	2 cut(s)	464, 783
SgrBI	CCGCGG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	407, 488
SmoI	CTYRAG	2 cut(s)	407, 488
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	230, 476
StyI	CCWWGG	2 cut(s)	105, 471
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	6 cut(s)	15, 114, 303, 464, 674, 783
TauI	GCSGC	8 cut(s)	48, 83, 86, 104, 122, 125, 253, 535
TfiI	GAWTC	2 cut(s)	451, 481
TseI	GCWGC	4 cut(s)	24, 247, 274, 424
TspDTI	ATGAA	2 cut(s)	576, 683
TspGWI	ACGGA	1 cut(s)	561
VpaK11BI	GGWCC	1 cut(s)	417
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.