Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

18242320 .. 18243483

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCTGCACAATCGATTTCCGCCGCCTAGACGAAGGCTTCGGCGGCAAAACCTACAAGCGCAAGAGAAACCCCGAACCCACCGCCAACGAAGATGCTTTAGTCTTTGGCCCTGTCGGTGCTGCAATGGAAATCGACGACACGTGTTTACCTCCGTCAAAGCGGTCGGCGGTACCCTCGTCAGACAATCCCGACAAGCCGAGCTTCGGGAAGCCGAGCTACGACGGCGTGATCGCCGGGAGAGTCTCCGGCCGGAAGTGGAAGCAGCCGAGGAAGCAGAGGGCGTCGGCGACGCAGGTTAGCCATAAGGGGACGACTTTCGAGGAGAGAGCGAAGGAGAAGGAGATAAAGCGGGCGTACAGAGAGAGAATGGCGGAGCTGAAGGGCGACATCAAGAAGAACAAGGAGGAGAAGAGGAAGAAGAAAGAGGAGAGGGATAAGAAGAAGCAGGAGAACATCTTGAGGTCCGGGACCAAGCTGCAGGTGATTTCGAATCCGAAGACGCTGAAGAAGATTGCCAAGAGCAAGGACCGGAAGCTGCTCAAGGTTGTTCCTGATGATTTGATCAACAAGAACAAAAAGAAGAAGAAGAACAACAACGACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

203

Amino Acids

23.02

Weight (kDa)

10.06

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
Acc36I	ACCTGC	2 cut(s)	286, 472
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	8 cut(s)	22, 25, 45, 84, 163, 170, 352, 374
AcoI	YGGCCR	1 cut(s)	250
AcuI	CTGAAG	2 cut(s)	401, 527
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	174, 359
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	2 cut(s)	141, 143
AluBI	AGCT	5 cut(s)	204, 219, 379, 478, 538
AluI	AGCT	5 cut(s)	204, 219, 379, 478, 538
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	3 cut(s)	3, 109, 250
ApeKI	GCWGC	4 cut(s)	122, 265, 478, 538
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp718I	GGTACC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	4 cut(s)	110, 465, 471, 529
AsuC2I	CCSGG	2 cut(s)	238, 469
AsuHPI	GGTGA	1 cut(s)	496
AsuII	TTCGAA	1 cut(s)	491
AvaII	GGWCC	3 cut(s)	465, 471, 529
BaeI	ACNNNNGTAYC	2 cut(s)	164, 197
BanI	GGYRCC	1 cut(s)	172
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	506
BbvI	GCAGC	4 cut(s)	109, 277, 465, 525
BceAI	ACGGC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	564
BcnI	CCSGG	2 cut(s)	238, 469
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	29, 607
BfmI	CTRYAG	1 cut(s)	479
BfuAI	ACCTGC	2 cut(s)	286, 472
BisI	GCNGC	6 cut(s)	25, 46, 123, 266, 479, 539
BlsI	GCNGC	6 cut(s)	26, 47, 124, 267, 480, 540
Bme1390I	CCNGG	2 cut(s)	238, 469
Bme18I	GGWCC	3 cut(s)	465, 471, 529
BmgT120I	GGNCC	4 cut(s)	110, 465, 471, 529
BmiI	GGNNCC	2 cut(s)	174, 472
BmrFI	CCNGG	2 cut(s)	238, 469
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	506
Bpu14I	TTCGAA	1 cut(s)	491
BpuEI	CTTGAG	2 cut(s)	481, 527
BpuMI	CCSGG	2 cut(s)	238, 469
Bsa29I	ATCGAT	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	132
BseRI	GAGGAG	3 cut(s)	338, 422, 443
BseX3I	CGGCCG	1 cut(s)	250
BseXI	GCAGC	4 cut(s)	109, 277, 465, 525
Bsh1285I	CGRYCG	2 cut(s)	167, 253
BshFI	GGCC	3 cut(s)	5, 111, 252
BshNI	GGYRCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	15
BsiEI	CGRYCG	2 cut(s)	167, 253
BsiSI	CCGG	5 cut(s)	237, 249, 253, 468, 532
BslFI	GGGAC	2 cut(s)	325, 484
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	325, 484
BsnI	GGCC	3 cut(s)	5, 111, 252
Bsp119I	TTCGAA	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	231, 564
BspACI	CCGC	8 cut(s)	22, 25, 45, 84, 163, 170, 352, 374
BspANI	GGCC	3 cut(s)	5, 111, 252
BspDI	ATCGAT	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	174, 472
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	2 cut(s)	286, 472
BspT104I	TTCGAA	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	231, 564
BssNI	GRCGYC	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	7, 354
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	234, 567
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	2 cut(s)	231, 564
BstMCI	CGRYCG	2 cut(s)	167, 253
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 225, 274
BstSCI	CCNGG	2 cut(s)	236, 467
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	4 cut(s)	109, 277, 465, 525
BstV2I	GAAGAC	1 cut(s)	506
BstZI	CGGCCG	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	5, 111, 252
BsuTUI	ATCGAT	1 cut(s)	15
BveI	ACCTGC	2 cut(s)	286, 472
Cac8I	GCNNGC	2 cut(s)	7, 354
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	4 cut(s)	110, 465, 471, 529
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	3 cut(s)	273, 301, 511
Csp6I	GTAC	2 cut(s)	173, 358
CviQI	GTAC	2 cut(s)	173, 358
DpnI	GATC	2 cut(s)	233, 566
DpnII	GATC	2 cut(s)	231, 564
EaeI	YGGCCR	1 cut(s)	250
EagI	CGGCCG	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EciI	GGCGGA	2 cut(s)	11, 389
EclXI	CGGCCG	1 cut(s)	250
Eco47I	GGWCC	3 cut(s)	465, 471, 529
Eco52I	CGGCCG	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	401, 527
Eco72I	CACGTG	1 cut(s)	144
FaiI	YATR	1 cut(s)	306
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	2 cut(s)	325, 484
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	6 cut(s)	25, 46, 123, 266, 479, 539
Fsp4HI	GCNGC	6 cut(s)	25, 46, 123, 266, 479, 539
FspBI	CTAG	2 cut(s)	29, 607
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	6 cut(s)	25, 46, 123, 266, 479, 539
HaeIII	GGCC	3 cut(s)	5, 111, 252
HapII	CCGG	5 cut(s)	237, 249, 253, 468, 532
HgaI	GACGC	3 cut(s)	273, 301, 511
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	243, 493
HpaII	CCGG	5 cut(s)	237, 249, 253, 468, 532
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	184, 498
Hpy188III	TCNNGA	5 cut(s)	191, 208, 394, 460, 554
Hpy8I	GTNNAC	1 cut(s)	149
Hpy99I	CGWCG	5 cut(s)	140, 227, 289, 295, 605
HpyAV	CCTTC	4 cut(s)	29, 328, 334, 376
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	9, 125, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 225, 274
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	284
HspAI	GCGC	1 cut(s)	61
KpnI	GGTACC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	2 cut(s)	231, 564
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	4 cut(s)	109, 277, 465, 525
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	29, 607
MaeII	ACGT	1 cut(s)	143
MalI	GATC	2 cut(s)	233, 566
MboI	GATC	2 cut(s)	231, 564
MlyI	GAGTC	1 cut(s)	252
MspI	CCGG	5 cut(s)	237, 249, 253, 468, 532
MspR9I	CCNGG	2 cut(s)	238, 469
MwoI	GCNNNNNNNGC	3 cut(s)	45, 225, 274
NciI	CCSGG	2 cut(s)	238, 469
NdeII	GATC	2 cut(s)	231, 564
NlaIV	GGNNCC	2 cut(s)	174, 472
NmeAIII	GCCGAG	3 cut(s)	225, 240, 294
NspV	TTCGAA	1 cut(s)	491
PaqCI	CACCTGC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	493
PfoI	TCCNGGA	1 cut(s)	467
PkrI	GCNGC	6 cut(s)	26, 47, 124, 267, 480, 540
PleI	GAGTC	1 cut(s)	251
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	144
PspCI	CACGTG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	174, 472
PspPI	GGNCC	4 cut(s)	110, 465, 471, 529
PstI	CTGCAG	1 cut(s)	483
RsaI	GTAC	2 cut(s)	174, 359
RsaNI	GTAC	2 cut(s)	173, 358
SatI	GCNGC	6 cut(s)	25, 46, 123, 266, 479, 539
Sau3AI	GATC	2 cut(s)	231, 564
Sau96I	GGNCC	4 cut(s)	110, 465, 471, 529
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	238, 469
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	479
SfuI	TTCGAA	1 cut(s)	491
SinI	GGWCC	3 cut(s)	465, 471, 529
SmlI	CTYRAG	2 cut(s)	460, 542
SmoI	CTYRAG	2 cut(s)	460, 542
SsiI	CCGC	8 cut(s)	22, 25, 45, 84, 163, 170, 352, 374
SspMI	CTAG	2 cut(s)	29, 607
StyD4I	CCNGG	2 cut(s)	236, 467
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	4 cut(s)	15, 135, 321, 491
TauI	GCSGC	2 cut(s)	27, 48
TfiI	GAWTC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	122, 265, 478, 538
TspGWI	ACGGA	1 cut(s)	144
VpaK11BI	GGWCC	3 cut(s)	465, 471, 529
XspI	CTAG	2 cut(s)	29, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.