Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007025.1

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

499 .. 831

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007025.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggcttgcacaatcgacttccgctgcttagacaaaggcttcgccggcaaaacctacaagcgcaagcggaaccccaaagccgccgccgacgaccaagatgccgccatggaaatcgacgccacctacccacctccggcgaagcgatctttggtgtccttctcgaacaatccggaaaaaccagtcgtaatcgccgggaaggtctccgagcgaaagtggaagcagccgaggaagcagaggtcgtcggtggttcaggtgagtcggaaggggacaatgttcgaggagagggagaagaacaagtcggtgaagaagacgtacagagaatggcgaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

110

Amino Acids

12.67

Weight (kDa)

10.14

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	5 cut(s)	22, 67, 81, 84, 102
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
Alw26I	GTCTC	1 cut(s)	205
Aor13HI	TCCGGA	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	24, 220
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	265, 313
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	11, 232
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	205
BisI	GCNGC	5 cut(s)	25, 81, 84, 102, 221
BlsI	GCNGC	5 cut(s)	26, 82, 85, 103, 222
Bme1390I	CCNGG	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	105, 224
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	105, 224
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	11, 232
BsiSI	CCGG	4 cut(s)	45, 134, 170, 192
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	5 cut(s)	22, 67, 81, 84, 102
BspEI	TCCGGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	105, 224
BssMI	GATC	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	7, 46, 65
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 229
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	11, 232
BstV2I	GAAGAC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	7, 46, 65
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	44
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	4 cut(s)	5, 39, 80, 223
CviKI_1	RGCY	4 cut(s)	5, 39, 80, 223
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	5 cut(s)	25, 81, 84, 102, 221
Fsp4HI	GCNGC	5 cut(s)	25, 81, 84, 102, 221
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	5 cut(s)	25, 81, 84, 102, 221
HapII	CCGG	4 cut(s)	45, 134, 170, 192
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	4 cut(s)	45, 134, 170, 192
HphI	GGTGA	2 cut(s)	265, 313
Hpy188I	TCNGA	2 cut(s)	205, 261
Hpy188III	TCNNGA	2 cut(s)	160, 170
Hpy99I	CGWCG	3 cut(s)	92, 119, 244
HpyAV	CCTTC	3 cut(s)	166, 190, 256
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 229
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	311
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	58, 147, 183, 192, 205, 236
Lsp1109I	GCAGC	2 cut(s)	11, 232
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	311
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	3 cut(s)	301, 316, 319
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	141, 219, 228, 271, 276
MroI	TCCGGA	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	4 cut(s)	45, 134, 170, 192
MspR9I	CCNGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	45, 229
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	143
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	26, 82, 85, 103, 222
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SatI	GCNGC	5 cut(s)	25, 81, 84, 102, 221
Sau3AI	GATC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	7 cut(s)	56, 125, 133, 201, 239, 255, 314
SfaNI	GCATC	1 cut(s)	88
SsiI	CCGC	5 cut(s)	22, 67, 81, 84, 102
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	4 cut(s)	15, 114, 161, 276
TauI	GCSGC	3 cut(s)	83, 86, 104
TseI	GCWGC	2 cut(s)	24, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.