Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

43926386 .. 43926874

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013898

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACTCAAGAATAGGGCTGGGTAAGCCTAGTTTTCACTATATGGCTTGCACAATTGACTTCCGCTGCCTAGACAAAGGCTTCGGCGGCAAAACCTACAAGCGCAAGAGGAACCCCGAAGCCGCCACCGATGACCAAGATGCCGCCATGGAAATCGACGCCACCTACCCACCTCCGGCAAAGCAATCTGTGGTGTCCTTCTTGGACAATCCGGACAAACTAGTCGTGATCGCCGGGAAGGTGAGTCGGAAGGGAACGACGTTCGAGGAGAGGGAGAAGAACAAGTCAGTGAAGAAGGCGTACAAGGAGAGAATGGTGGAGCTGAAGGGGGAGATTAAGAGGAAACAAGGAGGAGAAGAGGAGGAAGAGGAAGGAAAGGGAGAAGAAGAAGAAGGAGAATATTCTTCCGGAGGAGATGATCAAGAGGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

145

Amino Acids

16.16

Weight (kDa)

5.06

Isoelectric Point (pI)

71.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccIII	TCCGGA	2 cut(s)	211, 407
AciI	CCGC	4 cut(s)	64, 87, 123, 144
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	220
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Aor13HI	TCCGGA	2 cut(s)	211, 407
ApeKI	GCWGC	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	253
BarI	GAAGNNNNNNTAC	2 cut(s)	284, 316
BbvI	GCAGC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	235
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	3 cut(s)	30, 71, 221
BisI	GCNGC	4 cut(s)	67, 88, 123, 144
BlsI	GCNGC	4 cut(s)	68, 89, 124, 145
Bme1390I	CCNGG	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	2 cut(s)	211, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseAI	TCCGGA	2 cut(s)	211, 407
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseRI	GAGGAG	4 cut(s)	281, 366, 374, 426
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	19
BsiSI	CCGG	4 cut(s)	176, 212, 234, 408
BslI	CCNNNNNNNGG	1 cut(s)	175
Bsp13I	TCCGGA	2 cut(s)	211, 407
Bsp143I	GATC	2 cut(s)	228, 418
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	4 cut(s)	64, 87, 123, 144
BspEI	TCCGGA	2 cut(s)	211, 407
BspLI	GGNNCC	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	228, 418
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	147
Bst6I	CTCTTC	2 cut(s)	351, 360
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	231, 421
BstMBI	GATC	2 cut(s)	228, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 87
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	6 cut(s)	19, 28, 47, 81, 122, 322
CviKI_1	RGCY	6 cut(s)	19, 28, 47, 81, 122, 322
CviQI	GTAC	1 cut(s)	301
DpnI	GATC	2 cut(s)	230, 420
DpnII	GATC	2 cut(s)	228, 418
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	351, 360
EarI	CTCTTC	2 cut(s)	351, 360
Eco130I	CCWWGG	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	42, 44, 149
FatI	CATG	1 cut(s)	147
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	4 cut(s)	67, 88, 123, 144
Fsp4HI	GCNGC	4 cut(s)	67, 88, 123, 144
FspBI	CTAG	3 cut(s)	30, 71, 221
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	67, 88, 123, 144
GsaI	CCCAGC	1 cut(s)	23
HapII	CCGG	4 cut(s)	176, 212, 234, 408
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	5, 244
HpaII	CCGG	4 cut(s)	176, 212, 234, 408
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	5 cut(s)	9, 212, 226, 408, 422
Hpy99I	CGWCG	2 cut(s)	161, 262
HpyAV	CCTTC	7 cut(s)	208, 232, 244, 289, 319, 365, 386
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 87
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	2 cut(s)	211, 407
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	228, 418
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	5 cut(s)	5, 189, 225, 247, 421
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	3 cut(s)	30, 71, 221
MaeII	ACGT	1 cut(s)	260
MalI	GATC	2 cut(s)	230, 420
MboI	GATC	2 cut(s)	228, 418
MboII	GAAGA	8 cut(s)	289, 304, 368, 377, 395, 396, 398, 401
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	227
MroI	TCCGGA	2 cut(s)	211, 407
MseI	TTAA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	4 cut(s)	176, 212, 234, 408
MspR9I	CCNGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	25, 87
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	228, 418
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	68, 89, 124, 145
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	4 cut(s)	67, 88, 123, 144
Sau3AI	GATC	2 cut(s)	228, 418
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	6 cut(s)	98, 167, 175, 243, 263, 324
SfaNI	GCATC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	4 cut(s)	64, 87, 123, 144
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	3 cut(s)	30, 71, 221
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	156, 264
TasI	AATT	1 cut(s)	54
TauI	GCSGC	3 cut(s)	90, 125, 146
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	66
TspRI	CASTG	1 cut(s)	294
XspI	CTAG	3 cut(s)	30, 71, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.