Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

1818208 .. 1819736

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0013700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCTAGGTGCATGCTGTTCCCCCCACCAGGTTATTTGTGGAACGGCGTGGGTGGCCAACCCCTTATACAACTCATTAAGCTGAATGCTAACAGGGAAAGAAAGAATGAAAAAATGAGAAGAAAAGAGAAGAGGAAAAGAAGGGAACATCTAGAGACTGTTGAGCAGAGAAGGAAAGATCTAGATAACACTAGCCTCACTGAAAAGGTGAAGCCTGCGCAGCCCATGGAGTTCCACTTCCAACATGACTCTTCTGAAAATTTCCAAATCATAGAGAGGAGAAAAGCCATAGTATTGCACCCTAATGGTCAGCATGACCATGGTAATGGTGTTAAAAGCTTATGTGCTTGTTGGGTTCTCTGCCTTCATCACTCAGACATTGATGTTGGTCTCTTGCCATGTCTTTTTGAACTGGAAAGGTGTGTGCATCAAGTACTATCTAGCAAACAAATTGATATTTTCCAGCAAGTACTGGGTTCTAGGCCTTTCTGTGAGTTCCATTACCCTAACGGAAAACTGAAGGTTATTTCTGACTCTGGTTCTCTTCTGATTGAATCGCAATTTAGGGAGTTGATTTTGAATTGGGTTCCTCCTCCCTTGGAGACTCCGAACACTGAGTTTGGTGATCAGCAATGGCCCTATGATAGAGGGCCACTCAGGAATGACACAAGTCAGAAAACTAGTGCTGCTAGTAGTGATCATTTTTGCTATCCATATGCAACACTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

243

Amino Acids

28.2

Weight (kDa)

8.4

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	2 cut(s)	435, 471
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	410, 554, 580
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	82, 339
AluI	AGCT	2 cut(s)	82, 339
Alw26I	GTCTC	3 cut(s)	149, 395, 596
AoxI	GGCC	4 cut(s)	55, 482, 635, 650
ApeKI	GCWGC	2 cut(s)	220, 686
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	636, 650
AsuHPI	GGTGA	2 cut(s)	220, 635
BalI	TGGCCA	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	232, 673
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	2 cut(s)	625, 697
BcoDI	GTCTC	3 cut(s)	149, 395, 596
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	8 cut(s)	6, 152, 182, 192, 441, 480, 681, 690
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	2 cut(s)	221, 687
BlsI	GCNGC	2 cut(s)	222, 688
BmcAI	AGTACT	2 cut(s)	435, 471
Bme1390I	CCNGG	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	636, 650
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	436
BmuI	ACTGGG	1 cut(s)	482
BoxI	GACNNNNGTC	1 cut(s)	669
BplI	GAGNNNNNCTC	2 cut(s)	639, 671
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	225, 319, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	417, 477
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	225, 319, 597
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	3 cut(s)	387, 606, 670
BseNI	ACTGG	2 cut(s)	417, 477
BseRI	GAGGAG	2 cut(s)	292, 582
BseXI	GCAGC	2 cut(s)	232, 673
BshFI	GGCC	4 cut(s)	57, 484, 637, 652
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	3 cut(s)	149, 395, 596
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	57, 484, 637, 652
Bso31I	GGTCTC	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	178, 625, 697
Bsp19I	CCATGG	2 cut(s)	225, 319
BspANI	GGCC	4 cut(s)	57, 484, 637, 652
BspCNI	CTCAG	3 cut(s)	386, 607, 669
BspLI	GGNNCC	1 cut(s)	588
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	638
BsrI	ACTGG	2 cut(s)	417, 477
BssECI	CCNNGG	3 cut(s)	225, 319, 597
BssMI	GATC	3 cut(s)	178, 625, 697
BssT1I	CCWWGG	3 cut(s)	225, 319, 597
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	3 cut(s)	125, 256, 549
BstC8I	GCNNGC	2 cut(s)	14, 216
BstDEI	CTNAG	3 cut(s)	373, 615, 656
BstDSI	CCRYGG	2 cut(s)	225, 319
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	181, 628, 700
BstMAI	GTCTC	3 cut(s)	149, 395, 596
BstMBI	GATC	3 cut(s)	178, 625, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 220
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	16
BstPAI	GACNNNNGTC	1 cut(s)	669
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	232, 673
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	4 cut(s)	57, 484, 637, 652
BtgI	CCRYGG	2 cut(s)	225, 319
BtsIMutI	CAGTG	2 cut(s)	198, 612
Cac8I	GCNNGC	2 cut(s)	14, 216
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	636, 650
CsiI	ACCWGGT	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	434, 470
CviAII	CATG	6 cut(s)	13, 226, 245, 314, 320, 399
CviQI	GTAC	2 cut(s)	434, 470
DdeI	CTNAG	3 cut(s)	373, 615, 656
DpnI	GATC	3 cut(s)	180, 627, 699
DpnII	GATC	3 cut(s)	178, 625, 697
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	3 cut(s)	125, 256, 549
EarI	CTCTTC	3 cut(s)	125, 256, 549
Eco130I	CCWWGG	3 cut(s)	225, 319, 597
Eco147I	AGGCCT	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	3 cut(s)	225, 319, 597
ErhI	CCWWGG	3 cut(s)	225, 319, 597
FaeI	CATG	6 cut(s)	16, 229, 248, 317, 323, 402
FatI	CATG	6 cut(s)	12, 225, 244, 313, 319, 398
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	2 cut(s)	625, 697
Fnu4HI	GCNGC	2 cut(s)	221, 687
Fsp4HI	GCNGC	2 cut(s)	221, 687
FspBI	CTAG	8 cut(s)	6, 152, 182, 192, 441, 480, 681, 690
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	221, 687
HaeIII	GGCC	4 cut(s)	57, 484, 637, 652
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	6 cut(s)	16, 229, 248, 317, 323, 402
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	4 cut(s)	248, 533, 554, 604
HphI	GGTGA	2 cut(s)	220, 635
Hpy188I	TCNGA	6 cut(s)	256, 376, 532, 549, 609, 675
Hpy188III	TCNNGA	3 cut(s)	152, 182, 658
HpyAV	CCTTC	4 cut(s)	135, 165, 374, 514
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	12, 298, 427, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 220
HpyF3I	CTNAG	3 cut(s)	373, 615, 656
Hsp92II	CATG	6 cut(s)	16, 229, 248, 317, 323, 402
HspAI	GCGC	1 cut(s)	218
Ksp22I	TGATCA	2 cut(s)	625, 697
Kzo9I	GATC	3 cut(s)	178, 625, 697
LpnPI	CCDG	9 cut(s)	15, 42, 79, 228, 398, 458, 476, 522, 643
Lsp1109I	GCAGC	2 cut(s)	232, 673
LweI	GCATC	1 cut(s)	436
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	8 cut(s)	6, 152, 182, 192, 441, 480, 681, 690
MalI	GATC	3 cut(s)	180, 627, 699
MboI	GATC	3 cut(s)	178, 625, 697
MboII	GAAGA	4 cut(s)	132, 142, 243, 536
MflI	RGATCY	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	4 cut(s)	259, 450, 560, 580
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	3 cut(s)	242, 527, 598
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	6 cut(s)	126, 206, 270, 600, 603, 641
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	3 cut(s)	78, 333, 730
MslI	CAYNNNNRTG	3 cut(s)	303, 318, 324
Msp20I	TGGCCA	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	54, 220
NcoI	CCATGG	2 cut(s)	225, 319
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	3 cut(s)	178, 625, 697
NlaIII	CATG	6 cut(s)	16, 229, 248, 317, 323, 402
NlaIV	GGNNCC	1 cut(s)	588
NsbI	TGCGCA	1 cut(s)	219
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	484
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	222, 688
PleI	GAGTC	3 cut(s)	242, 527, 598
PpsI	GAGTC	3 cut(s)	242, 527, 598
PshAI	GACNNNNGTC	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	588
PspPI	GGNCC	2 cut(s)	636, 650
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	435, 471
RsaNI	GTAC	2 cut(s)	434, 470
RseI	CAYNNNNRTG	3 cut(s)	303, 318, 324
SaqAI	TTAA	3 cut(s)	78, 333, 730
SatI	GCNGC	2 cut(s)	221, 687
Sau3AI	GATC	3 cut(s)	178, 625, 697
Sau96I	GGNCC	2 cut(s)	636, 650
ScaI	AGTACT	2 cut(s)	435, 471
SchI	GAGTC	3 cut(s)	242, 527, 598
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	7 cut(s)	11, 34, 84, 210, 341, 422, 525
SexAI	ACCWGGT	1 cut(s)	28
SfaNI	GCATC	1 cut(s)	436
SmiMI	CAYNNNNRTG	3 cut(s)	303, 318, 324
SpeI	ACTAGT	1 cut(s)	680
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	4 cut(s)	259, 450, 560, 580
SseBI	AGGCCT	1 cut(s)	484
SspMI	CTAG	8 cut(s)	6, 152, 182, 192, 441, 480, 681, 690
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	3 cut(s)	225, 319, 597
TaaI	ACNGT	1 cut(s)	160
TasI	AATT	4 cut(s)	259, 450, 560, 580
TatI	WGTACW	2 cut(s)	433, 469
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	3 cut(s)	78, 333, 730
Tru9I	TTAA	3 cut(s)	78, 333, 730
TscAI	CASTG	2 cut(s)	205, 619
TseI	GCWGC	2 cut(s)	220, 686
TspDTI	ATGAA	2 cut(s)	123, 356
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	205, 619
XapI	RAATTY	1 cut(s)	259
XbaI	TCTAGA	2 cut(s)	151, 181
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36
XspI	CTAG	8 cut(s)	6, 152, 182, 192, 441, 480, 681, 690
ZrmI	AGTACT	2 cut(s)	435, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.