Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

7545005 .. 7547623

Gene Structure 2619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0048700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTGCAGTGATCCTGCGCAGTCAAAGACTGCATTTGTTACGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGGGAGCAACAATGGTTGATTATATTGTGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCCGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGACAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACTAGCAGGTATGTGACTGTGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGGTACAAAAACCAGAGAAAAGTTCCATATGGTTGTGTCAAACTTGACTGCAAAGGTAGAGCATATTATTAGAGAAGAGAATATGATGGCAGCTCAGGAGATCATCGAGCTATATATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

229

Amino Acids

24.99

Weight (kDa)

8.94

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
Acc36I	ACCTGC	2 cut(s)	486, 557
AclWI	GGATC	2 cut(s)	5, 484
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	138, 571
AfiI	CCNNNNNNNGG	2 cut(s)	179, 376
AgsI	TTSAA	4 cut(s)	46, 65, 128, 526
AhdI	GACNNNNNGTC	1 cut(s)	416
AluBI	AGCT	5 cut(s)	59, 203, 518, 659, 676
AluI	AGCT	5 cut(s)	59, 203, 518, 659, 676
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	5, 484
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	5 cut(s)	437, 449, 515, 563, 656
AseI	ATTAAT	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	205, 348
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	449, 461, 527, 550, 668
BccI	CCATC	2 cut(s)	158, 646
BceAI	ACGGC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	2 cut(s)	219, 492
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	2 cut(s)	486, 557
BisI	GCNGC	5 cut(s)	438, 450, 516, 564, 657
BlsI	GCNGC	5 cut(s)	439, 451, 517, 565, 658
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmsI	GCATC	5 cut(s)	40, 141, 244, 298, 317
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
Bpu10I	CCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 376
Bse1I	ACTGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	179, 376
BseMII	CTCAG	3 cut(s)	303, 435, 674
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	5 cut(s)	449, 461, 527, 550, 668
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	179, 376
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	424
Bsp1286I	GDGCHC	2 cut(s)	205, 348
Bsp143I	GATC	4 cut(s)	10, 403, 476, 666
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	3 cut(s)	304, 434, 673
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	2 cut(s)	486, 557
BspPI	GGATC	2 cut(s)	5, 484
BspTNI	GGTCTC	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	478
BssMI	GATC	4 cut(s)	10, 403, 476, 666
Bst4CI	ACNGT	3 cut(s)	364, 484, 508
Bst6I	CTCTTC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	3 cut(s)	312, 421, 660
BstF5I	GGATG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	4 cut(s)	13, 406, 479, 669
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	4 cut(s)	10, 403, 476, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 560
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	5 cut(s)	449, 461, 527, 550, 668
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 381
BveI	ACCTGC	2 cut(s)	486, 557
Cac8I	GCNNGC	1 cut(s)	561
CfoI	GCGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	137, 570
CviQI	GTAC	2 cut(s)	137, 570
DdeI	CTNAG	3 cut(s)	312, 421, 660
DpnI	GATC	4 cut(s)	12, 405, 478, 668
DpnII	GATC	4 cut(s)	10, 403, 476, 666
DriI	GACNNNNNGTC	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	636
Eam1105I	GACNNNNNGTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	369
Eco24I	GRGCYC	2 cut(s)	205, 348
Eco31I	GGTCTC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	203
EcoT38I	GRGCYC	2 cut(s)	205, 348
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	5 cut(s)	438, 450, 516, 564, 657
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	2 cut(s)	205, 348
Fsp4HI	GCNGC	5 cut(s)	438, 450, 516, 564, 657
FspBI	CTAG	2 cut(s)	219, 492
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	5 cut(s)	438, 450, 516, 564, 657
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	262, 382
Hpy188I	TCNGA	2 cut(s)	313, 424
Hpy188III	TCNNGA	4 cut(s)	62, 84, 206, 662
Hpy8I	GTNNAC	2 cut(s)	262, 382
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	3 cut(s)	364, 484, 508
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	7 cut(s)	6, 32, 230, 308, 449, 566, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 560
HpyF3I	CTNAG	3 cut(s)	312, 421, 660
HpySE526I	ACGT	1 cut(s)	41
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	403
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	10, 403, 476, 666
LmnI	GCTCC	2 cut(s)	86, 512
Lsp1109I	GCAGC	5 cut(s)	449, 461, 527, 550, 668
LweI	GCATC	5 cut(s)	40, 141, 244, 298, 317
MaeI	CTAG	2 cut(s)	219, 492
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	37, 109, 319, 502
MalI	GATC	4 cut(s)	12, 405, 478, 668
MboI	GATC	4 cut(s)	10, 403, 476, 666
MboII	GAAGA	1 cut(s)	653
MfeI	CAATTG	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	205, 348
MluCI	AATT	5 cut(s)	130, 141, 243, 356, 461
MseI	TTAA	3 cut(s)	144, 381, 464
MspI	CCGG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	446, 560
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	4 cut(s)	10, 403, 476, 666
NmuCI	GTSAC	2 cut(s)	109, 502
NsbI	TGCGCA	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	369
PkrI	GCNGC	5 cut(s)	439, 451, 517, 565, 658
PshBI	ATTAAT	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	568
RsaI	GTAC	2 cut(s)	138, 571
RsaNI	GTAC	2 cut(s)	137, 570
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	144, 381, 464
SatI	GCNGC	5 cut(s)	438, 450, 516, 564, 657
Sau3AI	GATC	4 cut(s)	10, 403, 476, 666
SduI	GDGCHC	2 cut(s)	205, 348
SfaNI	GCATC	5 cut(s)	40, 141, 244, 298, 317
SfcI	CTRYAG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	5 cut(s)	130, 141, 243, 356, 461
SseBI	AGGCCT	1 cut(s)	369
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	2 cut(s)	219, 492
SstI	GAGCTC	1 cut(s)	205
StuI	AGGCCT	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	364, 484, 508
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	672
TasI	AATT	5 cut(s)	130, 141, 243, 356, 461
Tru1I	TTAA	3 cut(s)	144, 381, 464
Tru9I	TTAA	3 cut(s)	144, 381, 464
TscAI	CASTG	2 cut(s)	13, 381
TseFI	GTSAC	2 cut(s)	109, 502
TseI	GCWGC	5 cut(s)	437, 449, 515, 563, 656
Tsp45I	GTSAC	2 cut(s)	109, 502
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	13, 381
VspI	ATTAAT	1 cut(s)	144
XspI	CTAG	2 cut(s)	219, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.