Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

33421549 .. 33421932

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCCTGCACAATTAACTTCCGCTGCGTAGACGAAGGCTTCGGTGGCAAAACCTACAAGCGCAAGTGGAACCCCGAAGCCGCCGCCGACCACGAAGATGCCGCCATGGAAATCAACGCAGCCTACCCACGTCCGGTGAAGCGATCCGCGGTGTCCTCCTCTGACAATCCGGACAAACAAGTCTTTGGCCGGTCGAGCTACGACGTCGTGATTGCCGGGAAGGTCTCCGGGCGGAAGCAGAGGTCATCGGCGGTTCAGGTGAGCCGGAAGGGGACGACATTTGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAGAGGAACAAGAAGGAGAAGAGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

9.93

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	9 cut(s)	22, 81, 84, 102, 147, 149, 232, 251, 335
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	131
AluBI	AGCT	2 cut(s)	198, 340
AluI	AGCT	2 cut(s)	198, 340
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	2 cut(s)	3, 187
ApeKI	GCWGC	2 cut(s)	24, 119
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	2 cut(s)	217, 229
AsuHPI	GGTGA	3 cut(s)	148, 271, 319
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbvI	GCAGC	2 cut(s)	11, 131
BcnI	CCSGG	2 cut(s)	217, 229
BcoDI	GTCTC	1 cut(s)	229
BisI	GCNGC	5 cut(s)	25, 81, 84, 102, 120
BlsI	GCNGC	5 cut(s)	26, 82, 85, 103, 121
Bme1390I	CCNGG	2 cut(s)	217, 229
BmgBI	CACGTC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	217, 229
BmsI	GCATC	1 cut(s)	88
BpuMI	CCSGG	2 cut(s)	217, 229
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	2 cut(s)	105, 147
BsaWI	WCCGGW	2 cut(s)	133, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	105, 147
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseRI	GAGGAG	2 cut(s)	148, 299
BseXI	GCAGC	2 cut(s)	11, 131
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	5, 189
BsiEI	CGRYCG	1 cut(s)	194
BsiSI	CCGG	6 cut(s)	134, 170, 190, 216, 228, 265
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	5, 189
Bso31I	GGTCTC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	9 cut(s)	22, 81, 84, 102, 147, 149, 232, 251, 335
BspANI	GGCC	2 cut(s)	5, 189
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	105, 147
BssMI	GATC	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	2 cut(s)	105, 147
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	143
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 195
BstSCI	CCNGG	2 cut(s)	215, 227
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	11, 131
BsuRI	GGCC	2 cut(s)	5, 189
BtgI	CCRYGG	2 cut(s)	105, 147
BtrI	CACGTC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	189
Cfr42I	CCGCGG	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	9 cut(s)	5, 39, 80, 122, 189, 198, 264, 340, 380
CviKI_1	RGCY	9 cut(s)	5, 39, 80, 122, 189, 198, 264, 340, 380
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EciI	GGCGGA	2 cut(s)	247, 350
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	5 cut(s)	25, 81, 84, 102, 120
Fsp4HI	GCNGC	5 cut(s)	25, 81, 84, 102, 120
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	5 cut(s)	25, 81, 84, 102, 120
HaeIII	GGCC	2 cut(s)	5, 189
HapII	CCGG	6 cut(s)	134, 170, 190, 216, 228, 265
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	6 cut(s)	134, 170, 190, 216, 228, 265
HphI	GGTGA	3 cut(s)	148, 271, 319
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	170, 208
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	2 cut(s)	206, 209
HpyAV	CCTTC	6 cut(s)	29, 214, 262, 307, 337, 361
HpyCH4IV	ACGT	2 cut(s)	130, 204
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 195
HpySE526I	ACGT	2 cut(s)	130, 204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	8 cut(s)	19, 147, 183, 203, 229, 241, 242, 278
Lsp1109I	GCAGC	2 cut(s)	11, 131
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	2 cut(s)	130, 204
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	3 cut(s)	107, 307, 322
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	6 cut(s)	166, 169, 234, 277, 282, 351
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	2 cut(s)	15, 354
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	2 cut(s)	24, 149
MspI	CCGG	6 cut(s)	134, 170, 190, 216, 228, 265
MspR9I	CCNGG	2 cut(s)	217, 229
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	45, 195
NciI	CCSGG	2 cut(s)	217, 229
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	26, 82, 85, 103, 121
PspN4I	GGNNCC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	96
SacII	CCGCGG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	15, 354
SatI	GCNGC	5 cut(s)	25, 81, 84, 102, 120
Sau3AI	GATC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	217, 229
SetI	ASST	8 cut(s)	56, 133, 200, 207, 225, 245, 261, 342
SfaNI	GCATC	1 cut(s)	88
Sfr303I	CCGCGG	1 cut(s)	150
SgrBI	CCGCGG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	9 cut(s)	22, 81, 84, 102, 147, 149, 232, 251, 335
StyD4I	CCNGG	2 cut(s)	215, 227
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	2 cut(s)	133, 207
TaqI	TCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	12
TauI	GCSGC	3 cut(s)	83, 86, 104
Tru1I	TTAA	2 cut(s)	15, 354
Tru9I	TTAA	2 cut(s)	15, 354
TseI	GCWGC	2 cut(s)	24, 119
XmiI	GTMKAC	1 cut(s)	30
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.