Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

67166206 .. 67167742

Gene Structure 1537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030772

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTTGCACAATCGACTTCCGCTGCCTAGACAAAGGCTTCGGCGGCAAAACCTACAAGCTCAAGTGGAATCCCGAAGCCGCCGCCGACGACCAAGATGCCGCCATGGAAATCGACGCCACCTACCCACCTCCGGCGAAGCGATCTGTGGTGTCCTTCTCGGACAATCCGGACAAACCAGTCGTGATCGCCGGGAAGGTCTCCGAGCGAAAGTGGAAGCAGCCGCGGAAGCAGAGGTCGTCGGTGGTTCAGGTGAGTCGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAGCAAGCCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAGACGAACAAGGAGGAGAAGAGGAGGAAGAGGGAGGGAAGGGAGAAGAAGAAGAAGAATATTGTTCCGGAGGAGATGATCAAGAGGAACAATAAGTGCTTCGAAGATCCAAGTTTCAGCGGCGGGTTGCGTGCCAGCATAGGAGAGATGGGGTGGTGGCAATGCCGGTCGCTAGAGGATCTGCTGGCGGCGAGTGTTGGCAATGGCAGCAGGGTCGTAATGCAAGGCGTTCTTCTGCCGGAGACAATGTCAGTGTGGTGGCCACCAGCTTGGAAACTAGGGTTTGCCTTAAATGGGCTTGGATCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

220

Amino Acids

24.76

Weight (kDa)

9.67

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	226
AccIII	TCCGGA	2 cut(s)	169, 415
AclWI	GGATC	3 cut(s)	449, 534, 658
AcoI	YGGCCR	1 cut(s)	608
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	133, 642
AluBI	AGCT	3 cut(s)	61, 334, 617
AluI	AGCT	3 cut(s)	61, 334, 617
Alw26I	GTCTC	2 cut(s)	205, 584
AlwI	GGATC	3 cut(s)	449, 534, 658
Aor13HI	TCCGGA	2 cut(s)	169, 415
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	3 cut(s)	24, 220, 555
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	265, 313
AsuII	TTCGAA	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BbvI	GCAGC	3 cut(s)	11, 232, 567
BccI	CCATC	1 cut(s)	490
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 544, 578
BclI	TGATCA	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	205, 584
BfaI	CTAG	3 cut(s)	29, 521, 626
Bme1390I	CCNGG	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	105, 224
BsaWI	WCCGGW	2 cut(s)	169, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	581, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 642
Bse118I	RCCGGY	2 cut(s)	298, 513
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	2 cut(s)	515, 556
BseAI	TCCGGA	2 cut(s)	169, 415
BseDI	CCNNGG	2 cut(s)	105, 224
BseLI	CCNNNNNNNGG	2 cut(s)	133, 642
BseMI	GCAATG	2 cut(s)	515, 556
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	4 cut(s)	293, 377, 385, 434
BseXI	GCAGC	3 cut(s)	11, 232, 567
Bsh1236I	CGCG	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	518
BshFI	GGCC	1 cut(s)	610
BsiEI	CGRYCG	1 cut(s)	518
BsiSI	CCGG	7 cut(s)	134, 170, 192, 299, 416, 514, 587
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	133, 642
BsmAI	GTCTC	2 cut(s)	205, 584
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	610
Bso31I	GGTCTC	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	450
Bsp13I	TCCGGA	2 cut(s)	169, 415
Bsp143I	GATC	6 cut(s)	143, 186, 426, 454, 526, 650
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	1 cut(s)	610
BspEI	TCCGGA	2 cut(s)	169, 415
BspFNI	CGCG	1 cut(s)	226
BspPI	GGATC	3 cut(s)	449, 534, 658
BspQI	GCTCTTC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	515, 556
BsrFI	RCCGGY	2 cut(s)	298, 513
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	2 cut(s)	298, 513
BssECI	CCNNGG	2 cut(s)	105, 224
BssMI	GATC	6 cut(s)	143, 186, 426, 454, 526, 650
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	3 cut(s)	284, 362, 371
BstACI	GRCGYC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	5 cut(s)	7, 296, 480, 484, 534
BstDSI	CCRYGG	2 cut(s)	105, 224
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	6 cut(s)	146, 189, 429, 457, 529, 653
BstMAI	GTCTC	2 cut(s)	205, 584
BstMBI	GATC	6 cut(s)	143, 186, 426, 454, 526, 650
BstMCI	CGRYCG	1 cut(s)	518
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 229, 555
BstSCI	CCNGG	1 cut(s)	191
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	11, 232, 567
BstX2I	RGATCY	3 cut(s)	454, 526, 650
BstXI	CCANNNNNNTGG	1 cut(s)	618
BstYI	RGATCY	3 cut(s)	454, 526, 650
BsuRI	GGCC	1 cut(s)	610
BtgI	CCRYGG	2 cut(s)	105, 224
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	5 cut(s)	7, 296, 480, 484, 534
Cfr10I	RCCGGY	2 cut(s)	298, 513
Cfr42I	CCGCGG	1 cut(s)	227
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	1 cut(s)	313
DpnI	GATC	6 cut(s)	145, 188, 428, 456, 528, 652
DpnII	GATC	6 cut(s)	143, 186, 426, 454, 526, 650
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	608
Eam1104I	CTCTTC	3 cut(s)	284, 362, 371
EarI	CTCTTC	3 cut(s)	284, 362, 371
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	2 cut(s)	107, 488
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	105
FauI	CCCGC	1 cut(s)	464
FbaI	TGATCA	1 cut(s)	426
FspBI	CTAG	3 cut(s)	29, 521, 626
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	7 cut(s)	134, 170, 192, 299, 416, 514, 587
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	2 cut(s)	70, 256
HpaII	CCGG	7 cut(s)	134, 170, 192, 299, 416, 514, 587
HphI	GGTGA	2 cut(s)	265, 313
Hpy188I	TCNGA	3 cut(s)	163, 205, 261
Hpy188III	TCNNGA	5 cut(s)	74, 170, 184, 416, 430
Hpy99I	CGWCG	4 cut(s)	92, 119, 244, 274
HpyAV	CCTTC	6 cut(s)	166, 190, 256, 301, 331, 381
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	9, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 229, 555
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	109
Kpn2I	TCCGGA	2 cut(s)	169, 415
Ksp22I	TGATCA	1 cut(s)	426
KspI	CCGCGG	1 cut(s)	227
Kzo9I	GATC	6 cut(s)	143, 186, 426, 454, 526, 650
LguI	GCTCTTC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	3 cut(s)	11, 232, 567
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	3 cut(s)	29, 521, 626
MaeII	ACGT	1 cut(s)	272
MalI	GATC	6 cut(s)	145, 188, 428, 456, 528, 652
MboI	GATC	6 cut(s)	143, 186, 426, 454, 526, 650
MflI	RGATCY	3 cut(s)	454, 526, 650
MlsI	TGGCCA	1 cut(s)	610
MluNI	TGGCCA	1 cut(s)	610
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	239
Mox20I	TGGCCA	1 cut(s)	610
MroI	TCCGGA	2 cut(s)	169, 415
MscI	TGGCCA	1 cut(s)	610
MseI	TTAA	2 cut(s)	348, 638
Msp20I	TGGCCA	1 cut(s)	610
MspA1I	CMGCKG	3 cut(s)	24, 226, 468
MspI	CCGG	7 cut(s)	134, 170, 192, 299, 416, 514, 587
MspR9I	CCNGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	45, 229, 555
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	6 cut(s)	143, 186, 426, 454, 526, 650
NlaIII	CATG	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PsuI	RGATCY	3 cut(s)	454, 526, 650
PsyI	GACNNNGTC	1 cut(s)	595
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SacII	CCGCGG	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	348, 638
Sau3AI	GATC	6 cut(s)	143, 186, 426, 454, 526, 650
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	88
Sfr303I	CCGCGG	1 cut(s)	227
SfuI	TTCGAA	1 cut(s)	450
SgrBI	CCGCGG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	3 cut(s)	29, 521, 626
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	4 cut(s)	15, 114, 276, 450
TauI	GCSGC	7 cut(s)	48, 83, 86, 104, 226, 471, 539
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	348, 638
Tru9I	TTAA	2 cut(s)	348, 638
TscAI	CASTG	1 cut(s)	606
TseI	GCWGC	3 cut(s)	24, 220, 555
TspRI	CASTG	1 cut(s)	606
Tth111I	GACNNNGTC	1 cut(s)	595
XspI	CTAG	3 cut(s)	29, 521, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.