Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

65565925 .. 65566395

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCTGCACAATTGACTTCCGCTGCCTAGACGAAGGCTTCGGTGGCAAAACCTACAAGCGCAACTGGAACCCCGAAGCCGCCGCCGACGACGAAGACGCCACCATGGAAATCGACTCAGCCTACCCACGTCCGGCGAAGCGATCCGTGGTGTCCTCCTCGGACAATCCGGACAAACAAGTCTTTGGCCGGCCGAGCTACGACGTCGTGATTGCCGGGAAGGTCTCCGGGCGGAAGTGGAAGCAGCCGCGGAAGCAGAGGTCATCGGCTGTTCAGGTGAGCCGGAAGGGGACGACGTTTGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAGAGGAACAAGGAGGAGAAGAGGAGGAAGAGCCTGAGGGAGAAGAAGAAGAAGGAGAATATTCTCAAGACTTGGACCAAGCTGCAGATTATTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

156

Amino Acids

18.04

Weight (kDa)

9.97

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cgr1	PF03879	73 - 143	1.1e-06	Cgr1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	207
AccII	CGCG	1 cut(s)	250
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	7 cut(s)	22, 81, 84, 232, 248, 250, 353
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	187, 191
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	2 cut(s)	99, 204
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	131
AluBI	AGCT	3 cut(s)	198, 358, 454
AluI	AGCT	3 cut(s)	198, 358, 454
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	3 cut(s)	3, 187, 191
ApeKI	GCWGC	3 cut(s)	24, 244, 454
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	447
AsuC2I	CCSGG	2 cut(s)	217, 229
AsuHPI	GGTGA	2 cut(s)	289, 337
AvaII	GGWCC	1 cut(s)	447
AxyI	CCTNAGG	1 cut(s)	407
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	11, 256, 441
BcnI	CCSGG	2 cut(s)	217, 229
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	455
BisI	GCNGC	6 cut(s)	25, 81, 84, 245, 248, 455
BlsI	GCNGC	6 cut(s)	26, 82, 85, 246, 249, 456
Bme1390I	CCNGG	2 cut(s)	217, 229
Bme18I	GGWCC	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	217, 229
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	217, 229
BsaHI	GRCGYC	2 cut(s)	99, 204
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	4 cut(s)	105, 147, 159, 248
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	4 cut(s)	105, 147, 159, 248
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	132, 398
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	4 cut(s)	148, 317, 401, 409
BseX3I	CGGCCG	1 cut(s)	191
BseXI	GCAGC	3 cut(s)	11, 256, 441
Bsh1236I	CGCG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	3 cut(s)	5, 189, 193
BsiEI	CGRYCG	1 cut(s)	194
BsiSI	CCGG	6 cut(s)	134, 170, 190, 216, 228, 283
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	5, 189, 193
Bso31I	GGTCTC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	7 cut(s)	22, 81, 84, 232, 248, 250, 353
BspANI	GGCC	3 cut(s)	5, 189, 193
BspCNI	CTCAG	2 cut(s)	131, 399
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	71
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	1 cut(s)	138
BspQI	GCTCTTC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	4 cut(s)	105, 147, 159, 248
BssMI	GATC	1 cut(s)	143
BssNI	GRCGYC	2 cut(s)	99, 204
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	2 cut(s)	386, 395
BstACI	GRCGYC	2 cut(s)	99, 204
BstC8I	GCNNGC	2 cut(s)	7, 191
BstDEI	CTNAG	2 cut(s)	118, 407
BstDSI	CCRYGG	3 cut(s)	105, 147, 248
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	143
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 195, 253
BstSCI	CCNGG	2 cut(s)	215, 227
BstSFI	CTRYAG	1 cut(s)	455
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	11, 256, 441
BstV2I	GAAGAC	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	5, 189, 193
BtgI	CCRYGG	3 cut(s)	105, 147, 248
BtrI	CACGTC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	7, 191
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	447
Cfr42I	CCGCGG	1 cut(s)	251
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	118, 407
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	2 cut(s)	187, 191
EagI	CGGCCG	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	386, 395
EarI	CTCTTC	2 cut(s)	386, 395
EciI	GGCGGA	2 cut(s)	247, 368
EclXI	CGGCCG	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	447
Eco52I	CGGCCG	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	380
Eco81I	CCTNAGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	6 cut(s)	25, 81, 84, 245, 248, 455
FseI	GGCCGGCC	1 cut(s)	193
Fsp4HI	GCNGC	6 cut(s)	25, 81, 84, 245, 248, 455
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	6 cut(s)	25, 81, 84, 245, 248, 455
HaeIII	GGCC	3 cut(s)	5, 189, 193
HapII	CCGG	6 cut(s)	134, 170, 190, 216, 228, 283
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	2 cut(s)	99, 204
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	6 cut(s)	134, 170, 190, 216, 228, 283
HphI	GGTGA	2 cut(s)	289, 337
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	3 cut(s)	170, 208, 439
Hpy99I	CGWCG	5 cut(s)	92, 95, 206, 209, 298
HpyAV	CCTTC	6 cut(s)	29, 214, 280, 325, 355, 418
HpyCH4IV	ACGT	3 cut(s)	130, 204, 296
HpyCH4V	TGCA	2 cut(s)	9, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 195, 253
HpyF3I	CTNAG	2 cut(s)	118, 407
HpySE526I	ACGT	3 cut(s)	130, 204, 296
Hsp92I	GRCGYC	2 cut(s)	99, 204
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	189
KroNI	GCCGGC	1 cut(s)	191
KspI	CCGCGG	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	143
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	11, 256, 441
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	3 cut(s)	130, 204, 296
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	8 cut(s)	107, 325, 340, 403, 412, 427, 430, 433
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	110
MroI	TCCGGA	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	189
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	2 cut(s)	24, 250
MspI	CCGG	6 cut(s)	134, 170, 190, 216, 228, 283
MspR9I	CCNGG	2 cut(s)	217, 229
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	3 cut(s)	45, 195, 253
NaeI	GCCGGC	1 cut(s)	191
NciI	CCSGG	2 cut(s)	217, 229
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	143
NgoMIV	GCCGGC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	395
PdiI	GCCGGC	1 cut(s)	191
PkrI	GCNGC	6 cut(s)	26, 82, 85, 246, 249, 456
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	447
PstI	CTGCAG	1 cut(s)	459
RigI	GGCCGGCC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacII	CCGCGG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	6 cut(s)	25, 81, 84, 245, 248, 455
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	217, 229
SfcI	CTRYAG	1 cut(s)	455
Sfr303I	CCGCGG	1 cut(s)	251
SgrBI	CCGCGG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	7 cut(s)	22, 81, 84, 232, 248, 250, 353
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	215, 227
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	3 cut(s)	133, 207, 299
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	12
TauI	GCSGC	3 cut(s)	83, 86, 250
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	3 cut(s)	24, 244, 454
TspGWI	ACGGA	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	447
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.