Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003073.1

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

10489 .. 10962

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003073.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggcctgcacaattgacttccgctgcctagacgaaggcttcggtggcaaaacctacaagcgcaactggaaccccgaagccgccgccgacgacgaagacgccgccatggaaatcgacgcagcctacccacttccggcgaagcgatccgcggtgtcctcctcggacaaacaagtctttggccggccgagctacgacgtcgtgatcgccgggaaggtctccgggcggaagtggaagcagccgcagaagcagaggtcatcggcggttcaggtgagctggaaagggacgacgtttgaggagagggagaagaacaagtcggtgaagaaggcgtacaaggagagaatggcggagctgaagggggagattaagaggaacaagggggcgaagaggaggaagagcctgagggagaagaagaagaaggagaatattctcaagacttggaccaagctgcagattatttccaaaaaaaagggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

157

Amino Acids

17.91

Weight (kDa)

10.06

Isoelectric Point (pI)

61.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	149
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	178, 182
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	2 cut(s)	99, 195
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	133
AluBI	AGCT	4 cut(s)	189, 273, 349, 445
AluI	AGCT	4 cut(s)	189, 273, 349, 445
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	3 cut(s)	3, 178, 182
ApeKI	GCWGC	4 cut(s)	24, 119, 235, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	438
AsuC2I	CCSGG	2 cut(s)	208, 220
AsuHPI	GGTGA	2 cut(s)	280, 328
AvaII	GGWCC	1 cut(s)	438
AxyI	CCTNAGG	1 cut(s)	398
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	4 cut(s)	11, 131, 247, 432
BcnI	CCSGG	2 cut(s)	208, 220
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	29, 472
BfmI	CTRYAG	1 cut(s)	446
BisI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 236, 239, 446
BlsI	GCNGC	8 cut(s)	26, 82, 85, 103, 121, 237, 240, 447
Bme1390I	CCNGG	2 cut(s)	208, 220
Bme18I	GGWCC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	208, 220
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	208, 220
BsaHI	GRCGYC	2 cut(s)	99, 195
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	105, 147, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	398
BseDI	CCNNGG	3 cut(s)	105, 147, 159
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	3 cut(s)	148, 308, 400
BseX3I	CGGCCG	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	11, 131, 247, 432
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	5, 180, 184
BsiEI	CGRYCG	1 cut(s)	185
BsiSI	CCGG	4 cut(s)	134, 181, 207, 219
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	5, 180, 184
Bso31I	GGTCTC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	143, 201
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	3 cut(s)	5, 180, 184
BspCNI	CTCAG	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	71
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	138
BspQI	GCTCTTC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	3 cut(s)	105, 147, 159
BssMI	GATC	2 cut(s)	143, 201
BssNI	GRCGYC	2 cut(s)	99, 195
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	2 cut(s)	377, 386
BstACI	GRCGYC	2 cut(s)	99, 195
BstC8I	GCNNGC	2 cut(s)	7, 182
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	2 cut(s)	105, 147
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	146, 204
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	143, 201
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 186, 244
BstSCI	CCNGG	2 cut(s)	206, 218
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	4 cut(s)	11, 131, 247, 432
BstV2I	GAAGAC	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	182
Bsu36I	CCTNAGG	1 cut(s)	398
BsuRI	GGCC	3 cut(s)	5, 180, 184
BtgI	CCRYGG	2 cut(s)	105, 147
Cac8I	GCNNGC	2 cut(s)	7, 182
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	438
Cfr42I	CCGCGG	1 cut(s)	150
CseI	GACGC	2 cut(s)	107, 125
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	2 cut(s)	145, 203
DpnII	GATC	2 cut(s)	143, 201
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	2 cut(s)	178, 182
EagI	CGGCCG	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	377, 386
EarI	CTCTTC	2 cut(s)	377, 386
EciI	GGCGGA	2 cut(s)	238, 359
EclXI	CGGCCG	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	438
Eco52I	CGGCCG	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 236, 239, 446
FseI	GGCCGGCC	1 cut(s)	184
Fsp4HI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 236, 239, 446
FspBI	CTAG	2 cut(s)	29, 472
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 236, 239, 446
HaeIII	GGCC	3 cut(s)	5, 180, 184
HapII	CCGG	4 cut(s)	134, 181, 207, 219
HgaI	GACGC	2 cut(s)	107, 125
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	2 cut(s)	99, 195
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	4 cut(s)	134, 181, 207, 219
HphI	GGTGA	2 cut(s)	280, 328
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	199, 430
Hpy99I	CGWCG	6 cut(s)	92, 95, 119, 197, 200, 289
HpyAV	CCTTC	5 cut(s)	29, 205, 316, 346, 409
HpyCH4IV	ACGT	2 cut(s)	195, 287
HpyCH4V	TGCA	2 cut(s)	9, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 186, 244
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	195, 287
Hsp92I	GRCGYC	2 cut(s)	99, 195
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	180
KroNI	GCCGGC	1 cut(s)	182
KspI	CCGCGG	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	143, 201
LguI	GCTCTTC	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	19, 52, 147, 194, 220, 232, 251, 259, 410
Lsp1109I	GCAGC	4 cut(s)	11, 131, 247, 432
MaeI	CTAG	2 cut(s)	29, 472
MaeII	ACGT	2 cut(s)	195, 287
MalI	GATC	2 cut(s)	145, 203
MboI	GATC	2 cut(s)	143, 201
MboII	GAAGA	8 cut(s)	107, 316, 331, 394, 403, 418, 421, 424
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	9 cut(s)	166, 169, 243, 286, 291, 360, 378, 381, 393
MroNI	GCCGGC	1 cut(s)	180
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	24, 149
MspI	CCGG	4 cut(s)	134, 181, 207, 219
MspR9I	CCNGG	2 cut(s)	208, 220
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	45, 186, 244
NaeI	GCCGGC	1 cut(s)	182
NciI	CCSGG	2 cut(s)	208, 220
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	143, 201
NgoMIV	GCCGGC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	386
PdiI	GCCGGC	1 cut(s)	182
PkrI	GCNGC	8 cut(s)	26, 82, 85, 103, 121, 237, 240, 447
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	438
PstI	CTGCAG	1 cut(s)	450
RigI	GGCCGGCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacII	CCGCGG	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	8 cut(s)	25, 81, 84, 102, 120, 236, 239, 446
Sau3AI	GATC	2 cut(s)	143, 201
Sau96I	GGNCC	1 cut(s)	438
ScrFI	CCNGG	2 cut(s)	208, 220
SfcI	CTRYAG	1 cut(s)	446
Sfr303I	CCGCGG	1 cut(s)	150
SgrBI	CCGCGG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	12
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	2 cut(s)	29, 472
StyD4I	CCNGG	2 cut(s)	206, 218
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	2 cut(s)	198, 290
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	12
TauI	GCSGC	4 cut(s)	83, 86, 104, 241
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	4 cut(s)	24, 119, 235, 445
VpaK11BI	GGWCC	1 cut(s)	438
XspI	CTAG	2 cut(s)	29, 472
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.