Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

7346387 .. 7353015

Gene Structure 6629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1041400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCCTGCACAATCGATTTCCGCCGCCTAGACGAAGGCTTCGGCGGCAAAACCTACAAGCGCAAGAGAAACCCCCAAGCCTCCGACGAAGATGCCTCTGTCTTTGGCGGCTCTGCAATGGAAATCGATGACTCGTATCCACCTCCAGCGAAGCGGTCGGCGGTACCCTCGTCTGACAATCCTGACAAGCCCAGCTTCGGGAAGCCGAGCTACGACGGCGTCATCGCGGGAAAAGTCTCCGGCCGGAAGTGGAAGCAGCCGAGGAAGCAGAGGGCGTCGGCGGCACAAGTTAGCCGAAAGGGGACGACGTTCGAGGAGAGGGCAAAGGCGAAGGAGATAAAGAGGGCTTACAGAGAGAGAATGACGGAGCTGAAGGACGAGATCAAGAAGAACAAGGAGGGGAAGAGGAGGAAGAGGGAGGAGAGGGAGAAGAAGAAGAAGGAGAATATCTTGAGGTCTGGGACTAAGCTGCAGGTGATTTCGAACCCGAAGACAATCAAGAAGATTGCAAAGACGAAGGATCGGAAGCTCCTCCAGCCGGTTCCGGAGCATTTGATCAACAAGAACAGGAGGAAGAGGAACAACAACGACGACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

200

Amino Acids

22.85

Weight (kDa)

10.25

Isoelectric Point (pI)

67.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cgr1	PF03879	77 - 173	5.2e-06	Cgr1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	463
Acc65I	GGTACC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	163
AccII	CGCG	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	544
AciI	CCGC	8 cut(s)	22, 25, 45, 108, 154, 161, 227, 281
AclWI	GGATC	1 cut(s)	528
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	2 cut(s)	219, 275
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	197, 198, 538
AluBI	AGCT	5 cut(s)	195, 210, 370, 469, 529
AluI	AGCT	5 cut(s)	195, 210, 370, 469, 529
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	528
Aor13HI	TCCGGA	1 cut(s)	544
AoxI	GGCC	2 cut(s)	3, 241
ApeKI	GCWGC	2 cut(s)	256, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp718I	GGTACC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	487
AsuII	TTCGAA	1 cut(s)	482
BaeI	ACNNNNGTAYC	2 cut(s)	155, 188
BanI	GGYRCC	1 cut(s)	163
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	2 cut(s)	268, 456
BceAI	ACGGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciVI	GTATCC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	147
BisI	GCNGC	6 cut(s)	25, 46, 109, 257, 282, 470
BlsI	GCNGC	6 cut(s)	26, 47, 110, 258, 283, 471
BmiI	GGNNCC	2 cut(s)	165, 543
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	2 cut(s)	129, 518
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	472
Bsa29I	ATCGAT	2 cut(s)	15, 126
BsaHI	GRCGYC	2 cut(s)	219, 275
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 198, 538
Bse118I	RCCGGY	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	544
BseCI	ATCGAT	2 cut(s)	15, 126
BseDI	CCNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	3 cut(s)	197, 198, 538
BseMI	GCAATG	1 cut(s)	123
BseRI	GAGGAG	4 cut(s)	329, 421, 434, 521
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	268, 456
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	2 cut(s)	158, 244
BshFI	GGCC	2 cut(s)	5, 243
BshNI	GGYRCC	1 cut(s)	163
BshVI	ATCGAT	2 cut(s)	15, 126
BsiEI	CGRYCG	2 cut(s)	158, 244
BsiSI	CCGG	4 cut(s)	240, 244, 539, 545
BslFI	GGGAC	2 cut(s)	316, 475
BslI	CCNNNNNNNGG	3 cut(s)	197, 198, 538
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	2 cut(s)	316, 475
BsnI	GGCC	2 cut(s)	5, 243
Bsp119I	TTCGAA	1 cut(s)	482
Bsp13I	TCCGGA	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	381, 520, 555
BspACI	CCGC	8 cut(s)	22, 25, 45, 108, 154, 161, 227, 281
BspANI	GGCC	2 cut(s)	5, 243
BspDI	ATCGAT	2 cut(s)	15, 126
BspEI	TCCGGA	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	165, 543
BspMAI	CTGCAG	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	1 cut(s)	528
BspT104I	TTCGAA	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	3 cut(s)	381, 520, 555
BssNI	GRCGYC	2 cut(s)	219, 275
Bst6I	CTCTTC	3 cut(s)	398, 407, 569
BstACI	GRCGYC	2 cut(s)	219, 275
BstBI	TTCGAA	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	384, 523, 558
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	3 cut(s)	381, 520, 555
BstMCI	CGRYCG	2 cut(s)	158, 244
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 216, 265, 281, 535
BstSFI	CTRYAG	1 cut(s)	470
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	268, 456
BstV2I	GAAGAC	1 cut(s)	497
BstZI	CGGCCG	1 cut(s)	241
Bsu15I	ATCGAT	2 cut(s)	15, 126
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	5, 243
BsuTUI	ATCGAT	2 cut(s)	15, 126
BtgZI	GCGATG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	538
ClaI	ATCGAT	2 cut(s)	15, 126
CseI	GACGC	2 cut(s)	208, 264
Csp6I	GTAC	1 cut(s)	164
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	3 cut(s)	383, 522, 557
DpnII	GATC	3 cut(s)	381, 520, 555
EaeI	YGGCCR	1 cut(s)	241
EagI	CGGCCG	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	398, 407, 569
EarI	CTCTTC	3 cut(s)	398, 407, 569
EciI	GGCGGA	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	241
Eco52I	CGGCCG	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	392
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	2 cut(s)	316, 475
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	6 cut(s)	25, 46, 109, 257, 282, 470
Fsp4HI	GCNGC	6 cut(s)	25, 46, 109, 257, 282, 470
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	6 cut(s)	25, 46, 109, 257, 282, 470
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	2 cut(s)	129, 518
HaeIII	GGCC	2 cut(s)	5, 243
HapII	CCGG	4 cut(s)	240, 244, 539, 545
HgaI	GACGC	2 cut(s)	208, 264
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	2 cut(s)	219, 275
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	4 cut(s)	240, 244, 539, 545
HphI	GGTGA	1 cut(s)	487
Hpy188I	TCNGA	3 cut(s)	85, 175, 525
Hpy188III	TCNNGA	6 cut(s)	182, 199, 385, 451, 499, 545
Hpy99I	CGWCG	6 cut(s)	89, 218, 280, 310, 593, 596
HpyAV	CCTTC	5 cut(s)	29, 325, 367, 433, 511
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	4 cut(s)	9, 116, 472, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 216, 265, 281, 535
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	1 cut(s)	308
Hsp92I	GRCGYC	2 cut(s)	219, 275
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	544
KpnI	GGTACC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	3 cut(s)	381, 520, 555
LmnI	GCTCC	3 cut(s)	367, 534, 547
Lsp1109I	GCAGC	2 cut(s)	268, 456
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	308
MalI	GATC	3 cut(s)	383, 522, 557
MboI	GATC	3 cut(s)	381, 520, 555
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	108
MroI	TCCGGA	1 cut(s)	544
MspI	CCGG	4 cut(s)	240, 244, 539, 545
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	45, 216, 265, 281, 535
NdeII	GATC	3 cut(s)	381, 520, 555
NlaIV	GGNNCC	2 cut(s)	165, 543
NmeAIII	GCCGAG	2 cut(s)	231, 285
NspV	TTCGAA	1 cut(s)	482
PaqCI	CACCTGC	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	6 cut(s)	26, 47, 110, 258, 283, 471
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	165, 543
PstI	CTGCAG	1 cut(s)	474
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	6 cut(s)	25, 46, 109, 257, 282, 470
Sau3AI	GATC	3 cut(s)	381, 520, 555
SchI	GAGTC	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	470
SfuI	TTCGAA	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
SsiI	CCGC	8 cut(s)	22, 25, 45, 108, 154, 161, 227, 281
SspMI	CTAG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	4 cut(s)	15, 126, 312, 482
TauI	GCSGC	4 cut(s)	27, 48, 111, 284
TseI	GCWGC	2 cut(s)	256, 469
TspGWI	ACGGA	1 cut(s)	380
Tth111I	GACNNNGTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.