Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

32012931 .. 32013515

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCTGCACAATCGATTTCCGCTGCCTAGACGAAGGCTTCGGCGGCAAAACCTACAAGCGGAAGCGCAATCCCGAACCCGCCGCCGACGATGCCGCCATGGAAATCGACGCCGCCTATCCACCTCCGGCGAAGCGATCCGCCGTTTCCTCGTCGGACAACCCGGACAAGCCAGTCGTCTTCGGGCGGCCGAGCTACGACGGCGTCATCGCCGGGAAGGTTTCAGGACGGAAGTGGAAGCAGCCGCGGAAGCAGAGGTCGTCGGCGCTTCAGGTGAGCCGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGATCTGAAGGCGGAGATTAAGAGGAATAAGGAGGAGAAGAGGAGGAAGATGGAGGAGAGGGAGAAGCGGAAGAAGGAGAATATCTTGAGGACTGGGACCAAGTTGCAGATTATTTCGAATCCCAAGACGATTCAGAGGATTGCGAAAACAAAGGATAGGAAGAACCTGAAGCCTGTGCCGGAGGAGTTGATGAAGAGGAACAATAAGAAGAGTGGTCTTTTGGTTAGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

195

Amino Acids

22.22

Weight (kDa)

10.24

Isoelectric Point (pI)

72.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cgr1	PF03879	72 - 171	4.8e-06	Cgr1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccII	CGCG	1 cut(s)	247
AclWI	GGATC	2 cut(s)	132, 360
AcoI	YGGCCR	1 cut(s)	188
AcuI	CTGAAG	3 cut(s)	254, 377, 539
AcyI	GRCGYC	2 cut(s)	111, 204
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
AlwI	GGATC	2 cut(s)	132, 360
AoxI	GGCC	2 cut(s)	3, 188
ApeKI	GCWGC	2 cut(s)	24, 241
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	2 cut(s)	69, 268
AspS9I	GGNCC	1 cut(s)	447
AsuC2I	CCSGG	2 cut(s)	164, 214
AsuHPI	GGTGA	2 cut(s)	286, 334
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	447
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	11, 253
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	2 cut(s)	128, 217
BcnI	CCSGG	2 cut(s)	164, 214
BfaI	CTAG	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	8 cut(s)	25, 46, 84, 96, 114, 188, 242, 245
BlsI	GCNGC	8 cut(s)	26, 47, 85, 97, 115, 189, 243, 246
Bme1390I	CCNGG	2 cut(s)	164, 214
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	2 cut(s)	164, 214
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	172
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	2 cut(s)	164, 214
Bsa29I	ATCGAT	1 cut(s)	15
BsaHI	GRCGYC	2 cut(s)	111, 204
BsaJI	CCNNGG	2 cut(s)	99, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	173, 448
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	99, 245
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	173, 448
BseRI	GAGGAG	5 cut(s)	314, 398, 406, 419, 548
BseX3I	CGGCCG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	11, 253
Bsh1236I	CGCG	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	5, 190
BshVI	ATCGAT	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	5 cut(s)	128, 164, 213, 280, 530
BslFI	GGGAC	2 cut(s)	301, 460
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	301, 460
BsnI	GGCC	2 cut(s)	5, 190
Bsp119I	TTCGAA	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	137, 352
Bsp19I	CCATGG	1 cut(s)	99
BspANI	GGCC	2 cut(s)	5, 190
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	448
BspPI	GGATC	2 cut(s)	132, 360
BspT104I	TTCGAA	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	173, 448
BssECI	CCNNGG	2 cut(s)	99, 245
BssMI	GATC	2 cut(s)	137, 352
BssNI	GRCGYC	2 cut(s)	111, 204
BssT1I	CCWWGG	1 cut(s)	99
Bst6I	CTCTTC	3 cut(s)	383, 539, 554
BstACI	GRCGYC	2 cut(s)	111, 204
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	2 cut(s)	99, 245
BstFNI	CGCG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	69, 268
BstKTI	GATC	2 cut(s)	140, 355
BstMBI	GATC	2 cut(s)	137, 352
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 92, 201, 250
BstSCI	CCNGG	2 cut(s)	162, 212
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	11, 253
BstV2I	GAAGAC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BstZI	CGGCCG	1 cut(s)	188
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	5, 190
BsuTUI	ATCGAT	1 cut(s)	15
BtgI	CCRYGG	2 cut(s)	99, 245
BtgZI	GCGATG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	69, 268
Cfr13I	GGNCC	1 cut(s)	447
Cfr42I	CCGCGG	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	2 cut(s)	119, 193
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	9 cut(s)	5, 39, 172, 190, 195, 244, 279, 523, 579
CviKI_1	RGCY	9 cut(s)	5, 39, 172, 190, 195, 244, 279, 523, 579
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	2 cut(s)	139, 354
DpnII	GATC	2 cut(s)	137, 352
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	188
EagI	CGGCCG	1 cut(s)	188
Eam1104I	CTCTTC	3 cut(s)	383, 539, 554
EarI	CTCTTC	3 cut(s)	383, 539, 554
EciI	GGCGGA	3 cut(s)	130, 365, 377
EclXI	CGGCCG	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	447
Eco52I	CGGCCG	1 cut(s)	188
Eco57I	CTGAAG	3 cut(s)	254, 377, 539
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	103
FaiI	YATR	1 cut(s)	101
FaqI	GGGAC	2 cut(s)	301, 460
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	8 cut(s)	25, 46, 84, 96, 114, 188, 242, 245
Fsp4HI	GCNGC	8 cut(s)	25, 46, 84, 96, 114, 188, 242, 245
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	2 cut(s)	68, 267
GluI	GCNGC	8 cut(s)	25, 46, 84, 96, 114, 188, 242, 245
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	5, 190
HapII	CCGG	5 cut(s)	128, 164, 213, 280, 530
HgaI	GACGC	2 cut(s)	119, 193
HhaI	GCGC	2 cut(s)	69, 268
Hin1I	GRCGYC	2 cut(s)	111, 204
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	2 cut(s)	67, 266
HinP1I	GCGC	2 cut(s)	67, 266
HinfI	GANTC	2 cut(s)	469, 481
HpaII	CCGG	5 cut(s)	128, 164, 213, 280, 530
HphI	GGTGA	2 cut(s)	286, 334
Hpy188I	TCNGA	3 cut(s)	157, 357, 486
Hpy188III	TCNNGA	3 cut(s)	74, 225, 436
Hpy99I	CGWCG	6 cut(s)	92, 113, 157, 203, 265, 295
HpyAV	CCTTC	6 cut(s)	29, 211, 277, 322, 352, 418
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	9, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 92, 201, 250
HpySE526I	ACGT	1 cut(s)	293
Hsp92I	GRCGYC	2 cut(s)	111, 204
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	2 cut(s)	67, 266
KspI	CCGCGG	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	137, 352
Lsp1109I	GCAGC	2 cut(s)	11, 253
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	293
MalI	GATC	2 cut(s)	139, 354
MboI	GATC	2 cut(s)	137, 352
MboII	GAAGA	9 cut(s)	172, 322, 337, 400, 409, 433, 523, 556, 571
MflI	RGATCY	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	135
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	24, 247
MspI	CCGG	5 cut(s)	128, 164, 213, 280, 530
MspR9I	CCNGG	2 cut(s)	164, 214
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	4 cut(s)	45, 92, 201, 250
NciI	CCSGG	2 cut(s)	164, 214
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	137, 352
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	448
NmeAIII	GCCGAG	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	469, 481
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	8 cut(s)	26, 47, 85, 97, 115, 189, 243, 246
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SacII	CCGCGG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	8 cut(s)	25, 46, 84, 96, 114, 188, 242, 245
Sau3AI	GATC	2 cut(s)	137, 352
Sau96I	GGNCC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	164, 214
SetI	ASST	8 cut(s)	56, 127, 197, 222, 260, 276, 296, 519
SfaNI	GCATC	1 cut(s)	82
Sfr303I	CCGCGG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	467
SgrBI	CCGCGG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	162, 212
StyI	CCWWGG	1 cut(s)	99
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	4 cut(s)	15, 108, 297, 467
TauI	GCSGC	6 cut(s)	48, 86, 98, 116, 190, 247
TfiI	GAWTC	2 cut(s)	469, 481
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	2 cut(s)	24, 241
TspDTI	ATGAA	1 cut(s)	557
TspGWI	ACGGA	1 cut(s)	244
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	447
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.