Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Reverse (-)

50906812 .. 50907366

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCTACACAATCGACTTCCGTTGCCTAGACGAAGGCTTCGGCGGCAAAACCTACAAGCGCAAACAGAACCCCGAAGCCGCCGCTGCCAACGAAGATGCCGCCATGGAAATCGACGCCCCCTACCCACCTCCGGCAAAGCGATCCATGGTGTCCTCCTCGGACAAACCAGTCTTCGGCCAGCCGAGCTACGACGGCGTGATCGCATGGAAGGTCTCCGGGCGAAAGTGGAAGCAGCCGCGGAAGCAAAGGTCGTCGGCGGTTCAGGTGAGCTGGAAGGGGACGACGTTTGTGGAAAGGGAGAAGAACAAGTCGGTGAAGAAGGTGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAAAGGAACAAGGAGGAGAAGAGGAGGAAGAGGGAGGAGAGGGAGAAAAAGAAGAAGGAGAATATGCTCAAGACTGGGACCAAGCTGCAGATTATTTCCAACCCCAAGACGATTCATAGGATTTTGAAAACCAAGGCCATGAATCAACTCAAGCCTGTTACGGAGGAGATGATCAAGAGGAACAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

184

Amino Acids

21.36

Weight (kDa)

10.16

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccII	CGCG	1 cut(s)	241
AciI	CCGC	8 cut(s)	45, 81, 84, 102, 239, 241, 260, 344
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	133, 176
AgsI	TTSAA	1 cut(s)	490
AluBI	AGCT	4 cut(s)	189, 273, 349, 448
AluI	AGCT	4 cut(s)	189, 273, 349, 448
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	3 cut(s)	3, 178, 498
ApeKI	GCWGC	3 cut(s)	86, 235, 448
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	280, 328
AvaII	GGWCC	1 cut(s)	441
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	73, 247, 435
BceAI	ACGGC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	449
BisI	GCNGC	8 cut(s)	46, 81, 84, 87, 102, 236, 239, 449
BlsI	GCNGC	8 cut(s)	47, 82, 85, 88, 103, 237, 240, 450
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	166
BpuEI	CTTGAG	2 cut(s)	416, 497
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	5 cut(s)	105, 147, 159, 239, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 176
Bse1I	ACTGG	2 cut(s)	170, 442
BseDI	CCNNGG	5 cut(s)	105, 147, 159, 239, 495
BseLI	CCNNNNNNNGG	2 cut(s)	133, 176
BseNI	ACTGG	2 cut(s)	170, 442
BseRI	GAGGAG	5 cut(s)	148, 392, 400, 413, 542
BseXI	GCAGC	3 cut(s)	73, 247, 435
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	3 cut(s)	5, 180, 500
BsiSI	CCGG	2 cut(s)	134, 219
BslFI	GGGAC	2 cut(s)	295, 454
BslI	CCNNNNNNNGG	2 cut(s)	133, 176
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	2 cut(s)	295, 454
BsnI	GGCC	3 cut(s)	5, 180, 500
Bso31I	GGTCTC	1 cut(s)	220
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	143, 201, 534
Bsp19I	CCATGG	2 cut(s)	105, 147
BspACI	CCGC	8 cut(s)	45, 81, 84, 102, 239, 241, 260, 344
BspANI	GGCC	3 cut(s)	5, 180, 500
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	170, 442
BssECI	CCNNGG	5 cut(s)	105, 147, 159, 239, 495
BssMI	GATC	3 cut(s)	143, 201, 534
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	3 cut(s)	105, 147, 495
Bst6I	CTCTTC	2 cut(s)	377, 386
BstACI	GRCGYC	1 cut(s)	117
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	182
BstDSI	CCRYGG	3 cut(s)	105, 147, 239
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	146, 204, 537
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	3 cut(s)	143, 201, 534
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 86, 186, 195, 244
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	449
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	73, 247, 435
BstV2I	GAAGAC	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	5, 180, 500
BtgI	CCRYGG	3 cut(s)	105, 147, 239
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	441
Cfr42I	CCGCGG	1 cut(s)	242
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	106, 148, 207, 502
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	3 cut(s)	145, 203, 536
DpnII	GATC	3 cut(s)	143, 201, 534
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	377, 386
EarI	CTCTTC	2 cut(s)	377, 386
EciI	GGCGGA	1 cut(s)	359
Eco130I	CCWWGG	3 cut(s)	105, 147, 495
Eco31I	GGTCTC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	371
EcoT14I	CCWWGG	3 cut(s)	105, 147, 495
ErhI	CCWWGG	3 cut(s)	105, 147, 495
FaeI	CATG	4 cut(s)	109, 151, 210, 505
FaiI	YATR	6 cut(s)	107, 149, 208, 428, 480, 503
FaqI	GGGAC	2 cut(s)	295, 454
FatI	CATG	4 cut(s)	105, 147, 206, 501
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	8 cut(s)	46, 81, 84, 87, 102, 236, 239, 449
Fsp4HI	GCNGC	8 cut(s)	46, 81, 84, 87, 102, 236, 239, 449
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	8 cut(s)	46, 81, 84, 87, 102, 236, 239, 449
HaeIII	GGCC	3 cut(s)	5, 180, 500
HapII	CCGG	2 cut(s)	134, 219
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	109, 151, 210, 505
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	475, 505
HpaII	CCGG	2 cut(s)	134, 219
HphI	GGTGA	2 cut(s)	280, 328
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	433, 538
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	4 cut(s)	119, 197, 259, 289
HpyAV	CCTTC	6 cut(s)	29, 205, 271, 316, 346, 412
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 86, 186, 195, 244
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	109, 151, 210, 505
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	534
KspI	CCGCGG	1 cut(s)	242
Kzo9I	GATC	3 cut(s)	143, 201, 534
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	8 cut(s)	147, 183, 194, 232, 251, 259, 423, 531
Lsp1109I	GCAGC	3 cut(s)	73, 247, 435
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	3 cut(s)	145, 203, 536
MboI	GATC	3 cut(s)	143, 201, 534
MboII	GAAGA	7 cut(s)	107, 166, 316, 331, 394, 403, 427
MmeI	TCCRAC	1 cut(s)	486
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	86, 241
MspI	CCGG	2 cut(s)	134, 219
MspR9I	CCNGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	5 cut(s)	45, 86, 186, 195, 244
NciI	CCSGG	1 cut(s)	220
NcoI	CCATGG	2 cut(s)	105, 147
NdeII	GATC	3 cut(s)	143, 201, 534
NlaIII	CATG	4 cut(s)	109, 151, 210, 505
NlaIV	GGNNCC	1 cut(s)	442
NmeAIII	GCCGAG	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	475, 505
PkrI	GCNGC	8 cut(s)	47, 82, 85, 88, 103, 237, 240, 450
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	453
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacII	CCGCGG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	8 cut(s)	46, 81, 84, 87, 102, 236, 239, 449
Sau3AI	GATC	3 cut(s)	143, 201, 534
Sau96I	GGNCC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	449
Sfr303I	CCGCGG	1 cut(s)	242
SgrBI	CCGCGG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	441
SmlI	CTYRAG	2 cut(s)	431, 512
SmoI	CTYRAG	2 cut(s)	431, 512
SsiI	CCGC	8 cut(s)	45, 81, 84, 102, 239, 241, 260, 344
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	3 cut(s)	105, 147, 495
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	15, 114
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	5 cut(s)	48, 83, 86, 104, 241
TfiI	GAWTC	2 cut(s)	475, 505
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	3 cut(s)	86, 235, 448
TspDTI	ATGAA	2 cut(s)	467, 518
TspGWI	ACGGA	2 cut(s)	11, 539
VpaK11BI	GGWCC	1 cut(s)	441
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.