Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001180

Physical Location & Seq

Genomic Coordinates Forward (+)

55525428 .. 55526183

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG411100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCTGCACAATTGACTTCCGCTGCCTAGACGAAGGCTACGGTGGCAAAATCTACAAGCGCAAGCGGAACCCCGAAGCCGCCGCCACCGAGGAAGATGCCGCCATGGAAATCGACGCCTCCTACCCACCTCCGGCGAAGCGATCCACGGTGTCCTCCTCGGACAATTCAGACAAACCAGTCTTCGGCCGGCCGAGCCGCGTCGTCGTGATCGCTGGGAAGATCTCCGGGCTGAAGTCGAAGCATCTGCGGAAGCAGAGGTTGTCGGCGGTTCAAGTGAGCCGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAGAGGAACAAGGAGGAGAAGAGGAGGAAGAGGGAGGAGAGGGAGAAGAAGAAGAAGGAGAATATTCTCAAGACTGGGACCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cgr1

Protein Analysis

152

Amino Acids

17.34

Weight (kDa)

10.03

Isoelectric Point (pI)

66.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31410
fragaria_vesca	FvH4_4g34010
malus_domestica	MD00G1041400.v1.1 MD05G1139400.v1.1
prunus_persica	Prupe.2G125900_v2.0.a1
pyrus_communis	pycom02g17890
rosa_chinensis	RchiOBHm_Chr1g0315821 RchiOBHm_Chr2g0115461 RchiOBHm_Chr2g0117931 RchiOBHm_Chr5g0026441 RchiOBHm_Chr5g0049531 RchiOBHm_Chr5g0057561 RchiOBHm_Chr6g0252241 RchiOBHm_Chr6g0272931 RchiOBHm_Chr6g0295141 RchiOBHm_Chr7g0240621
rosa_laevigata	RLG00000013898 RLG00000030772 RLG00000034624
rosa_multiflora	Rmu_co8401929.1_g000001 Rmu_sc0000744.1_g000148 Rmu_sc0001527.1_g000041 Rmu_sc0002194.1_g000032 Rmu_sc0003073.1_g000005 Rmu_sc0005125.1_g000012 Rmu_sc0005723.1_g000005 Rmu_sc0007025.1_g000001 Rmu_sc0007848.1_g000017 Rmu_sc0013032.1_g000003 Rmu_sc0020614.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032170 Rroxscaffold_7G00177310
rosa_rugosa	Rorug01G0147800.1 Rorug04G0048700 Rorug04G0122300.1 Rorug05G0218500 Rorug05G0248800 Rorug06G0013700 Rorug06G0165700
rosa_samantha	Rh2CG259500 Rh2DG297300 Rh4AG287200 Rh4BG293000 Rh5AG325400 Rh5CG361400 Rh5CG411100 Rh6DG036500 Rh6DG152300 Rh7AG372400
rosa_wichuraiana	Rw0G017210 Rw0G022370 Rw1G041430 Rw2G040100 Rw5G030740 Rw6G027210 Rw7G012690 Rw7G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	201
AciI	CCGC	9 cut(s)	22, 67, 81, 84, 102, 199, 250, 269, 353
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	187, 191
AcuI	CTGAAG	2 cut(s)	254, 380
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	133, 185
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	3 cut(s)	3, 187, 191
ApeKI	GCWGC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	450
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	450
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbsI	GAAGAC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 229, 263
BcnI	CCSGG	1 cut(s)	229
BfaI	CTAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	5 cut(s)	25, 81, 84, 102, 199
BlsI	GCNGC	5 cut(s)	26, 82, 85, 103, 200
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	2 cut(s)	71, 451
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	88, 253
BmuI	ACTGGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	90, 105, 147, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 185
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	179, 451
BseDI	CCNNGG	4 cut(s)	90, 105, 147, 159
BseLI	CCNNNNNNNGG	2 cut(s)	133, 185
BseNI	ACTGG	2 cut(s)	179, 451
BseRI	GAGGAG	5 cut(s)	148, 317, 401, 409, 422
BseX3I	CGGCCG	2 cut(s)	187, 191
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	2 cut(s)	190, 194
BshFI	GGCC	3 cut(s)	5, 189, 193
BsiEI	CGRYCG	2 cut(s)	190, 194
BsiSI	CCGG	4 cut(s)	134, 190, 228, 283
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	133, 185
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	5, 189, 193
Bsp143I	GATC	3 cut(s)	143, 210, 222
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	9 cut(s)	22, 67, 81, 84, 102, 199, 250, 269, 353
BspANI	GGCC	3 cut(s)	5, 189, 193
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	71, 451
BspPI	GGATC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	179, 451
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	4 cut(s)	90, 105, 147, 159
BssMI	GATC	3 cut(s)	143, 210, 222
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	44, 151
Bst6I	CTCTTC	2 cut(s)	386, 395
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	7, 65, 191
BstDSI	CCRYGG	2 cut(s)	105, 147
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	146, 213, 225
BstMBI	GATC	3 cut(s)	143, 210, 222
BstMCI	CGRYCG	2 cut(s)	190, 194
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 195
BstSCI	CCNGG	1 cut(s)	227
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BstZI	CGGCCG	2 cut(s)	187, 191
BsuRI	GGCC	3 cut(s)	5, 189, 193
BtgI	CCRYGG	2 cut(s)	105, 147
Cac8I	GCNNGC	3 cut(s)	7, 65, 191
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	450
CseI	GACGC	2 cut(s)	125, 190
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	9 cut(s)	5, 39, 80, 189, 193, 198, 232, 282, 358
CviKI_1	RGCY	9 cut(s)	5, 39, 80, 189, 193, 198, 232, 282, 358
CviQI	GTAC	1 cut(s)	337
DpnI	GATC	3 cut(s)	145, 212, 224
DpnII	GATC	3 cut(s)	143, 210, 222
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	2 cut(s)	187, 191
EagI	CGGCCG	2 cut(s)	187, 191
Eam1104I	CTCTTC	2 cut(s)	386, 395
EarI	CTCTTC	2 cut(s)	386, 395
EciI	GGCGGA	1 cut(s)	368
EclXI	CGGCCG	2 cut(s)	187, 191
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	450
Eco52I	CGGCCG	2 cut(s)	187, 191
Eco57I	CTGAAG	2 cut(s)	254, 380
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	5 cut(s)	25, 81, 84, 102, 199
FseI	GGCCGGCC	1 cut(s)	193
Fsp4HI	GCNGC	5 cut(s)	25, 81, 84, 102, 199
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	5 cut(s)	25, 81, 84, 102, 199
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	5, 189, 193
HapII	CCGG	4 cut(s)	134, 190, 228, 283
HgaI	GACGC	2 cut(s)	125, 190
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	4 cut(s)	134, 190, 228, 283
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	163, 172
Hpy188III	TCNNGA	2 cut(s)	208, 442
Hpy99I	CGWCG	4 cut(s)	119, 206, 209, 298
HpyAV	CCTTC	5 cut(s)	29, 280, 325, 355, 421
HpyCH4III	ACNGT	2 cut(s)	44, 151
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 195
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	189
KroNI	GCCGGC	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	143, 210, 222
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	8 cut(s)	19, 147, 192, 201, 203, 241, 296, 432
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	2 cut(s)	88, 253
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	296
MalI	GATC	3 cut(s)	145, 212, 224
MboI	GATC	3 cut(s)	143, 210, 222
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	3 cut(s)	12, 166, 454
MroNI	GCCGGC	1 cut(s)	189
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	4 cut(s)	134, 190, 228, 283
MspR9I	CCNGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	45, 195
NaeI	GCCGGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	143, 210, 222
NgoMIV	GCCGGC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	71, 451
NmeAIII	GCCGAG	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	26, 82, 85, 103, 200
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	71, 451
PspPI	GGNCC	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	222
RigI	GGCCGGCC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	5 cut(s)	25, 81, 84, 102, 199
Sau3AI	GATC	3 cut(s)	143, 210, 222
Sau96I	GGNCC	1 cut(s)	450
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	4 cut(s)	133, 263, 299, 360
SfaNI	GCATC	2 cut(s)	88, 253
SinI	GGWCC	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	12, 166, 454
SsiI	CCGC	9 cut(s)	22, 67, 81, 84, 102, 199, 250, 269, 353
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	44, 151
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	3 cut(s)	114, 239, 300
TasI	AATT	3 cut(s)	12, 166, 454
TauI	GCSGC	4 cut(s)	83, 86, 104, 201
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	450
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.