Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

8016051 .. 8017508

Gene Structure 1458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCATTGGAAGAGGATATAGTATCAGATGATGAGATGAACATGATTGATGAGGATGATGCTACTGACTCCGAAGCGGAGTCTCTTTCGGATTCGGATACAGAGAACGAGATCACCGAGAAATTGGCTGAGCCTACGAAGACTGCGATATACAACAGAGATGGGTTGCTTGATAAGCTTCAAGATATTAGCTGGCCTGAAGATGTTGATTGGACTCATAAGCTTACTGTTGAGATTGACCAGGGAGGAGCTGTGGATGTAAACGATGACCTTGCGAGAGAGACGGCGTTCTACACTCAAGCGCTTGAAGGGACAAGAGAAGCGTTTGGTAAACTCAATGAAATGGGTGTGAATTTTCTCAGGCCTGCGAATTACTATGCGGAGATGGTGAAATCGGATGTTCATATGGAGAAAGTGAAGTCTCGGCTTTTGCATGAGAAGAAACAGATTGAGGAGTCTGAAGAGAGGAGGAAGGCTAGGGATAATAAGAGAATGGCTAAGGAAGTACAGTCTCAGAAGATGAAGGAACGTGCGAAGGAGAAGAAGGATAACATTGAGTCTGTGAAGAAGTGGAGGAAACAGAGGCAGCAGAGTGGGTTTAGTGATAAAGCTGGTGAGCCTGAACTTGATTTCGAAAGTGGAAAGAGTTTCCAGAGAGGAGGAGGTAAGAAAAGACCAGGTGTGTCTCCCGGAGATCGATCAGGAGGTAAAGGAAGGCCTACTTCGAGGATGGGCAACAAGAAGAGGGAGTTTCGGGATTCCAAGTTTGGTCATGGTGGTAGGAAGGGTTTGAGCAAGCAGAACACAGCAGAGACGACAAACGATTTCAAAGGCGGTTTCCGTGGTGGAAAAGCTAGCGGAAACAAGAGGCAGAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

293

Amino Acids

33.21

Weight (kDa)

6.96

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	50 - 290	1.7e-66	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	77, 380, 834, 858
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	2 cut(s)	219, 480
AfaI	GTAC	1 cut(s)	507
AfeI	AGCGCT	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	182, 308, 829
AjnI	CCWGG	2 cut(s)	240, 676
AluBI	AGCT	6 cut(s)	178, 192, 223, 251, 611, 854
AluI	AGCT	6 cut(s)	178, 192, 223, 251, 611, 854
Alw26I	GTCTC	6 cut(s)	87, 275, 426, 516, 690, 806
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	3 cut(s)	194, 362, 716
ApeKI	GCWGC	1 cut(s)	586
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	3 cut(s)	106, 400, 626
AsuII	TTCGAA	1 cut(s)	633
AsuNHI	GCTAGC	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	3 cut(s)	155, 379, 724
BceAI	ACGGC	1 cut(s)	300
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	2 cut(s)	242, 678
BciVI	GTATCC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	6 cut(s)	87, 275, 426, 516, 690, 806
BfaI	CTAG	2 cut(s)	477, 855
BfoI	RGCGCY	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	1 cut(s)	587
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	588
Bme1390I	CCNGG	3 cut(s)	242, 678, 690
BmrFI	CCNGG	3 cut(s)	242, 678, 690
BmsI	GCATC	1 cut(s)	49
BmtI	GCTAGC	1 cut(s)	858
BpiI	GAAGAC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu1102I	GCTNAGC	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	690
Bsa29I	ATCGAT	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	241, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
BseBI	CCWGG	2 cut(s)	242, 678
BseCI	ATCGAT	1 cut(s)	697
BseDI	CCNNGG	2 cut(s)	241, 841
BseGI	GGATG	4 cut(s)	61, 262, 403, 735
BseMII	CTCAG	3 cut(s)	120, 373, 527
BseRI	GAGGAG	5 cut(s)	261, 467, 481, 672, 675
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	3 cut(s)	196, 364, 718
BshVI	ATCGAT	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	325
BsmAI	GTCTC	6 cut(s)	87, 275, 426, 516, 690, 806
BsmBI	CGTCTC	2 cut(s)	275, 806
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	196, 364, 718
Bsp119I	TTCGAA	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	111, 694, 698
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	4 cut(s)	77, 380, 834, 858
BspANI	GGCC	3 cut(s)	196, 364, 718
BspCNI	CTCAG	3 cut(s)	121, 372, 526
BspDI	ATCGAT	1 cut(s)	697
BspOI	GCTAGC	1 cut(s)	858
BspT104I	TTCGAA	1 cut(s)	633
BssECI	CCNNGG	2 cut(s)	241, 841
BssMI	GATC	3 cut(s)	111, 694, 698
Bst2UI	CCWGG	2 cut(s)	242, 678
Bst4CI	ACNGT	2 cut(s)	229, 510
Bst6I	CTCTTC	4 cut(s)	6, 456, 737, 869
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	4 cut(s)	194, 366, 797, 856
BstDEI	CTNAG	4 cut(s)	129, 359, 498, 513
BstDSI	CCRYGG	1 cut(s)	841
BstF5I	GGATG	4 cut(s)	61, 262, 403, 735
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	3 cut(s)	114, 697, 701
BstMAI	GTCTC	6 cut(s)	87, 275, 426, 516, 690, 806
BstMBI	GATC	3 cut(s)	111, 694, 698
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	2 cut(s)	242, 678
BstSCI	CCNGG	3 cut(s)	240, 676, 688
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	697
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	196, 364, 718
BsuTUI	ATCGAT	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	841
BtsCI	GGATG	4 cut(s)	61, 262, 403, 735
Cac8I	GCNNGC	4 cut(s)	194, 366, 797, 856
CfoI	GCGC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	697
CsiI	ACCWGGT	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	3 cut(s)	43, 434, 773
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	4 cut(s)	129, 359, 498, 513
DpnI	GATC	3 cut(s)	113, 696, 700
DpnII	GATC	3 cut(s)	111, 694, 698
Eam1104I	CTCTTC	4 cut(s)	6, 456, 737, 869
EarI	CTCTTC	4 cut(s)	6, 456, 737, 869
Eco147I	AGGCCT	2 cut(s)	364, 718
Eco47III	AGCGCT	1 cut(s)	303
Eco57I	CTGAAG	2 cut(s)	219, 480
EcoRII	CCWGG	2 cut(s)	240, 676
Esp3I	CGTCTC	2 cut(s)	275, 806
FaeI	CATG	3 cut(s)	46, 437, 776
FaiI	YATR	9 cut(s)	20, 44, 151, 219, 378, 405, 407, 435, 774
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	42, 433, 772
FauNDI	CATATG	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	4 cut(s)	68, 269, 410, 742
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	2 cut(s)	477, 855
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	587
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	196, 364, 718
HapII	CCGG	1 cut(s)	690
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	46, 437, 776
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	176, 221
HinfI	GANTC	7 cut(s)	68, 80, 92, 214, 455, 557, 758
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	3 cut(s)	106, 400, 626
Hpy166II	GTNNAC	2 cut(s)	262, 332
Hpy188I	TCNGA	7 cut(s)	28, 73, 91, 97, 397, 460, 516
Hpy188III	TCNNGA	4 cut(s)	182, 652, 702, 755
Hpy8I	GTNNAC	2 cut(s)	262, 332
HpyAV	CCTTC	7 cut(s)	302, 466, 517, 529, 538, 708, 778
HpyCH4III	ACNGT	2 cut(s)	229, 510
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	4 cut(s)	129, 359, 498, 513
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	3 cut(s)	46, 437, 776
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	3 cut(s)	111, 694, 698
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	1 cut(s)	49
MabI	ACCWGGT	1 cut(s)	676
MaeI	CTAG	2 cut(s)	477, 855
MaeII	ACGT	1 cut(s)	529
MalI	GATC	3 cut(s)	113, 696, 700
MboI	GATC	3 cut(s)	111, 694, 698
MboII	GAAGA	9 cut(s)	23, 151, 212, 451, 473, 529, 553, 577, 754
MluCI	AATT	3 cut(s)	122, 352, 370
MlyI	GAGTC	5 cut(s)	62, 89, 208, 464, 566
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	3 cut(s)	242, 678, 690
MvaI	CCWGG	2 cut(s)	242, 678
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	3 cut(s)	111, 694, 698
NheI	GCTAGC	1 cut(s)	854
NlaIII	CATG	3 cut(s)	46, 437, 776
NmeAIII	GCCGAG	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	633
PceI	AGGCCT	2 cut(s)	364, 718
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 143
PfeI	GAWTC	2 cut(s)	92, 758
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	1 cut(s)	588
PleI	GAGTC	5 cut(s)	62, 88, 208, 463, 565
PpsI	GAGTC	5 cut(s)	62, 88, 208, 463, 565
Psp6I	CCWGG	2 cut(s)	240, 676
PspGI	CCWGG	2 cut(s)	240, 676
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	3 cut(s)	111, 694, 698
SchI	GAGTC	5 cut(s)	62, 89, 208, 464, 566
ScrFI	CCNGG	3 cut(s)	242, 678, 690
SexAI	ACCWGGT	1 cut(s)	676
SfaNI	GCATC	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	122, 352, 370
SseBI	AGGCCT	2 cut(s)	364, 718
SsiI	CCGC	4 cut(s)	77, 380, 834, 858
SspMI	CTAG	2 cut(s)	477, 855
StuI	AGGCCT	2 cut(s)	364, 718
StyD4I	CCNGG	3 cut(s)	240, 676, 688
TaaI	ACNGT	2 cut(s)	229, 510
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	3 cut(s)	633, 697, 725
TasI	AATT	3 cut(s)	122, 352, 370
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	2 cut(s)	92, 758
TseI	GCWGC	1 cut(s)	586
TspDTI	ATGAA	4 cut(s)	53, 354, 392, 536
TspGWI	ACGGA	1 cut(s)	830
XapI	RAATTY	1 cut(s)	352
XspI	CTAG	2 cut(s)	477, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.