Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

64715801 .. 64716241

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG378500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGGAAGCTGATGAGAGAAGGAAGGCCAGAGAGGCCAAGAAATTGTCTAAAGAGATTCAGAACCAGAAGTTGAAGGAGAGAGCTAAGCAGAAAAAGGAGTCTATTGAGTCTGTGAAGAAGTGGAGGAAGCAGAGGCAGCAAAGTGGGTTTGCTGGGGGTGACAAAGGAAGCGAGTTGGATTTGGCCTTTGAAGATGGGAAACCATTTGAGAAGTCAAGTAATAAGAGGCCTGGTGTAGCTCCCGGAGATCGGTCTGGAGGGAAGGCAAAATATGCTGGAAAGGGGAAGAAGCCAAAGAAGAGAGAAATCAAGGATTCCAAGTTTGGATTTGGTGGGAGGAAAGGTTCCAGGAAGCAAAATGTCGCTGAAACTACCAACGATTTGAGAGGCTTCAATAAAGAAGATGGTTTCTCAAAAAATAAGAAAAGGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

146

Amino Acids

16.53

Weight (kDa)

10.29

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	1 - 142	1.2e-24	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	76, 194, 397
AjnI	CCWGG	2 cut(s)	232, 350
AloI	GAACNNNNNNTCC	2 cut(s)	331, 363
AluBI	AGCT	3 cut(s)	11, 86, 242
AluI	AGCT	3 cut(s)	11, 86, 242
AoxI	GGCC	4 cut(s)	27, 36, 186, 230
ApeKI	GCWGC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	191, 401
BciT130I	CCWGG	2 cut(s)	234, 352
BcnI	CCSGG	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	140
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	234, 246, 352
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	3 cut(s)	234, 246, 352
BpmI	CTGGAG	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	234, 352
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	4 cut(s)	29, 38, 188, 232
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	252
BsnI	GGCC	4 cut(s)	29, 38, 188, 232
Bsp143I	GATC	1 cut(s)	250
Bsp1720I	GCTNAGC	1 cut(s)	87
BspANI	GGCC	4 cut(s)	29, 38, 188, 232
BspLI	GGNNCC	1 cut(s)	349
BssMI	GATC	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	234, 352
Bst6I	CTCTTC	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 139, 275
BstNI	CCWGG	2 cut(s)	234, 352
BstSCI	CCNGG	3 cut(s)	232, 244, 350
BstV1I	GCAGC	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	29, 38, 188, 232
CviJI	RGCY	9 cut(s)	11, 29, 38, 86, 188, 232, 242, 295, 393
CviKI_1	RGCY	9 cut(s)	11, 29, 38, 86, 188, 232, 242, 295, 393
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco147I	AGGCCT	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	232, 350
FaiI	YATR	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	140
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	4 cut(s)	29, 38, 188, 232
HapII	CCGG	1 cut(s)	246
HinfI	GANTC	4 cut(s)	58, 101, 110, 317
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	258
HpyAV	CCTTC	4 cut(s)	15, 19, 70, 259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 139, 275
HpyF3I	CTNAG	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	5 cut(s)	130, 206, 301, 313, 416
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	110, 119
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	28, 120, 129, 222, 254, 333, 383
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	3 cut(s)	234, 246, 352
MvaI	CCWGG	2 cut(s)	234, 352
MwoI	GCNNNNNNNGC	3 cut(s)	35, 139, 275
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	58, 317
PfoI	TCCNGGA	2 cut(s)	244, 350
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	2 cut(s)	109, 118
PpsI	GAGTC	2 cut(s)	109, 118
Psp6I	CCWGG	2 cut(s)	232, 350
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	232, 350
PspN4I	GGNNCC	1 cut(s)	349
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	250
SchI	GAGTC	2 cut(s)	110, 119
ScrFI	CCNGG	3 cut(s)	234, 246, 352
SetI	ASST	4 cut(s)	13, 88, 244, 349
SfiI	GGCCNNNNNGGCC	1 cut(s)	35
Sse9I	AATT	1 cut(s)	44
SseBI	AGGCCT	1 cut(s)	232
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	3 cut(s)	232, 244, 350
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	58, 317
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.