Rh4AG140200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001453
Physical Location & Seq
Forward (+)
35589660 .. 35589843
184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG140200.1

Sequence Viewer

Length: 184 bp
ATGGACGCGAGGACTTCGAAGATGCAGGATTCTTTTGAAGCCATCCGGACACAACAATCATCATTCAGAATTGAAATTTTAGAAGAGCTGCGTCTGATGCGTTTGGAACCAAAAAACCTAGTGACTGAAGCTACATCTCTTATGGTGTCAGGGGACACATTAACAGCTACCACTATAGCTGGAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.83

Weight (kDa)

4.89

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AccIII TCCGGA 1 cut(s) 45
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 147
AgsI TTSAA 2 cut(s) 38, 74
AluBI AGCT 4 cut(s) 88, 131, 167, 179
AluI AGCT 4 cut(s) 88, 131, 167, 179
Aor13HI TCCGGA 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 17
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 50
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 2 cut(s) 12, 87
Bpu14I TTCGAA 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 45
BseAI TCCGGA 1 cut(s) 45
BseGI GGATG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 45
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 17
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 174
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 42
CseI GACGC 2 cut(s) 14, 80
CviJI RGCY 5 cut(s) 41, 88, 131, 167, 179
CviKI_1 RGCY 5 cut(s) 41, 88, 131, 167, 179
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 147
FaiI YATR 2 cut(s) 143, 176
FaqI GGGAC 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 89
HapII CCGG 1 cut(s) 46
HgaI GACGC 2 cut(s) 14, 80
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 68, 96
Hpy188III TCNNGA 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
Kpn2I TCCGGA 1 cut(s) 45
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 11, 59, 135, 165
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 2 cut(s) 12, 87
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 2 cut(s) 31, 95
MluCI AATT 2 cut(s) 69, 75
MnlI CCTC 1 cut(s) 3
MroI TCCGGA 1 cut(s) 45
MseI TTAA 1 cut(s) 161
MspI CCGG 1 cut(s) 46
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 121
NspV TTCGAA 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 1 cut(s) 89
SetI ASST 5 cut(s) 90, 120, 133, 169, 181
SfaNI GCATC 2 cut(s) 12, 87
SfcI CTRYAG 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 17
SgeI CNNG 6 cut(s) 19, 21, 38, 58, 131, 162
Sse9I AATT 2 cut(s) 69, 75
SspMI CTAG 1 cut(s) 119
TaqI TCGA 1 cut(s) 17
TasI AATT 2 cut(s) 69, 75
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 121
XapI RAATTY 1 cut(s) 75
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.