Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005454.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

28253 .. 28906

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005454.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggcattcattgtgtgcggtgtgcattctttgataggacaaacagagtgtgcagattctttgtcaagtatattgggtgtttgtgccaaaggaggtggcaagtttggtgttaaggcgtatagtgatgggagaactttttacgcttatcagtttgcctgcattagtgttcaacatgttgtggatcaaattattgagatgtcaaacacaggtggtggagatataaatgtcccaaaattcaagattattgcttcacatcttgggatcacaactttctctgtcagtgctttgcagcaatttgggcatgaaagtctaagccaaccaattatggtggaagtttatgcagcaccagagattgacctgcatgatatattccttatacctggtacatcctatgtgcttactttaaacggagacccaataattggtgtaaaatttgaatttacgattttggcgtcgctgcaaattgagtatcaaaatgaatatcatattgatctgatggacgtcaaagctgttattgcaattacaattgttcaattgtattcaaaggaagctgctcagatatataagaagttgaatatgatgacaaggagtgcatatgagtttgagactttggaggttatcttggtggaatgctcagcagcacttgacctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

217

Amino Acids

23.72

Weight (kDa)

4.82

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	366
AccB7I	CCANNNNNTGG	1 cut(s)	422
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	189, 269
AcsI	RAATTY	3 cut(s)	233, 431, 437
AcyI	GRCGYC	2 cut(s)	452, 501
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	6 cut(s)	170, 238, 437, 533, 543, 574
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	2 cut(s)	509, 551
AluI	AGCT	2 cut(s)	509, 551
Alw26I	GTCTC	2 cut(s)	405, 599
AlwI	GGATC	2 cut(s)	189, 269
ApeKI	GCWGC	5 cut(s)	289, 341, 457, 551, 638
ApoI	RAATTY	3 cut(s)	233, 431, 437
BbvI	GCAGC	5 cut(s)	301, 353, 444, 538, 650
BccI	CCATC	2 cut(s)	119, 490
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	405, 599
BfuAI	ACCTGC	1 cut(s)	366
BisI	GCNGC	5 cut(s)	290, 342, 458, 552, 639
BlpI	GCTNAGC	1 cut(s)	634
BlsI	GCNGC	5 cut(s)	291, 343, 459, 553, 640
Bme1390I	CCNGG	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	634
BsaHI	GRCGYC	2 cut(s)	452, 501
BsaI	GGTCTC	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	569, 648
BseXI	GCAGC	5 cut(s)	301, 353, 444, 538, 650
BsgI	GTGCAG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	405, 599
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	3 cut(s)	5, 25, 635
Bso31I	GGTCTC	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	181, 261, 490
Bsp1720I	GCTNAGC	1 cut(s)	634
BspACI	CCGC	1 cut(s)	18
BspCNI	CTCAG	2 cut(s)	568, 647
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	2 cut(s)	189, 269
BspTNI	GGTCTC	1 cut(s)	405
BssMI	GATC	3 cut(s)	181, 261, 490
BssNI	GRCGYC	2 cut(s)	452, 501
Bst2UI	CCWGG	1 cut(s)	381
BstACI	GRCGYC	2 cut(s)	452, 501
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	311, 555, 634
BstF5I	GGATG	1 cut(s)	386
BstKTI	GATC	3 cut(s)	184, 264, 493
BstMAI	GTCTC	2 cut(s)	405, 599
BstMBI	GATC	3 cut(s)	181, 261, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 515
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	379
BstV1I	GCAGC	5 cut(s)	301, 353, 444, 538, 650
BtsCI	GGATG	1 cut(s)	386
BtsIMutI	CAGTG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	157
CseI	GACGC	1 cut(s)	441
CsiI	ACCWGGT	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	384
CspCI	CAANNNNNGTGG	4 cut(s)	76, 111, 309, 344
CviAII	CATG	3 cut(s)	173, 302, 362
CviJI	RGCY	3 cut(s)	315, 509, 551
CviKI_1	RGCY	3 cut(s)	315, 509, 551
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	3 cut(s)	311, 555, 634
DpnI	GATC	3 cut(s)	183, 263, 492
DpnII	GATC	3 cut(s)	181, 261, 490
DraI	TTTAAA	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	379
FaeI	CATG	3 cut(s)	176, 305, 365
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	172, 301, 361
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	5 cut(s)	290, 342, 458, 552, 639
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	5 cut(s)	290, 342, 458, 552, 639
GluI	GCNGC	5 cut(s)	290, 342, 458, 552, 639
HgaI	GACGC	1 cut(s)	441
Hin1I	GRCGYC	2 cut(s)	452, 501
Hin1II	CATG	3 cut(s)	176, 305, 365
HinfI	GANTC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	495, 558
Hpy188III	TCNNGA	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	9 cut(s)	25, 53, 159, 289, 341, 361, 460, 518, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 515
HpyF3I	CTNAG	3 cut(s)	311, 555, 634
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	2 cut(s)	452, 501
Hsp92II	CATG	3 cut(s)	176, 305, 365
Kzo9I	GATC	3 cut(s)	181, 261, 490
LpnPI	CCDG	6 cut(s)	169, 192, 360, 366, 371, 393
Lsp1109I	GCAGC	5 cut(s)	301, 353, 444, 538, 650
MabI	ACCWGGT	1 cut(s)	379
MaeII	ACGT	1 cut(s)	501
MalI	GATC	3 cut(s)	183, 263, 492
MboI	GATC	3 cut(s)	181, 261, 490
MfeI	CAATTG	2 cut(s)	525, 533
MnlI	CCTC	2 cut(s)	86, 607
MseI	TTAA	2 cut(s)	111, 404
MspR9I	CCNGG	1 cut(s)	381
MunI	CAATTG	2 cut(s)	525, 533
Mva1269I	GAATGC	3 cut(s)	5, 25, 635
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	298, 515
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	3 cut(s)	181, 261, 490
NlaIII	CATG	3 cut(s)	176, 305, 365
NspI	RCATGY	1 cut(s)	176
PciI	ACATGT	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	449
PctI	GAATGC	3 cut(s)	5, 25, 635
PfeI	GAWTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	5 cut(s)	291, 343, 459, 553, 640
PscI	ACATGT	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	111, 404
SatI	GCNGC	5 cut(s)	290, 342, 458, 552, 639
Sau3AI	GATC	3 cut(s)	181, 261, 490
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	9 cut(s)	97, 211, 360, 382, 504, 511, 553, 618, 651
SexAI	ACCWGGT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	379
TaiI	ACGT	1 cut(s)	504
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	111, 404
Tru9I	TTAA	2 cut(s)	111, 404
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	5 cut(s)	289, 341, 457, 551, 638
TspDTI	ATGAA	2 cut(s)	318, 492
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	422
XapI	RAATTY	3 cut(s)	233, 431, 437
XceI	RCATGY	1 cut(s)	176
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.