Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8133218.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 567

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8133218.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 566 bp

atgagaaatgacaacgaagatgaattcgcacaagtagatgaggagagtagagaaagagaacagaacttggagcatagccaagttgaagagatgagtgtccatatttccggcactgtgatgcgtgatgggctccgcggcgtgccggctattcggtcgtcaggaaattcgatgctggctaacgacgaggaactggaacacgatagtgatgtgggagcccatgtgtctgattccgaattggagcaagactcggaagagaaaggagatgtgagattgactaaaccctcccagaattctacatacaacaaaagaggtctgctagagaagctcagagatatgagttggactgagaatgctaaatgggtggacaagcttacgtcggatattgagcaagagcaaccggtggatgtgcatgatgacctgacaagggagcttgcattttatacacaggctctaaatcgaatgaggatggcctttgagaagtttcagttaatggggcttccatttctgagacctgaggactactatgcagaaatggtgaagtccgagtcccaattggggaaagtgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

188

Amino Acids

21.7

Weight (kDa)

4.55

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	133, 135
AcsI	RAATTY	3 cut(s)	23, 163, 289
AfiI	CCNNNNNNNGG	2 cut(s)	424, 555
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	86
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	325, 370, 430
AluI	AGCT	3 cut(s)	325, 370, 430
Alw26I	GTCTC	1 cut(s)	502
AoxI	GGCC	1 cut(s)	468
ApoI	RAATTY	3 cut(s)	23, 163, 289
AsiGI	ACCGGT	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	547
AxyI	CCTNAGG	1 cut(s)	513
BanII	GRGCYC	2 cut(s)	132, 217
BccI	CCATC	2 cut(s)	119, 460
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	131, 214
BmsI	GCATC	2 cut(s)	108, 159
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 555
Bse118I	RCCGGY	2 cut(s)	142, 397
Bse1I	ACTGG	1 cut(s)	195
Bse21I	CCTNAGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	409, 471
BseLI	CCNNNNNNNGG	2 cut(s)	424, 555
BseMII	CTCAG	4 cut(s)	336, 340, 497, 504
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	470
BshTI	ACCGGT	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	108, 143, 398
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	424, 555
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	132, 217
BspACI	CCGC	2 cut(s)	133, 135
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	4 cut(s)	337, 339, 498, 505
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	131, 214
BspTNI	GGTCTC	1 cut(s)	502
BsrFI	RCCGGY	2 cut(s)	142, 397
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	2 cut(s)	142, 397
BssECI	CCNNGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	81, 246
BstC8I	GCNNGC	4 cut(s)	140, 144, 174, 432
BstDEI	CTNAG	4 cut(s)	326, 345, 506, 513
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	409, 471
BstFNI	CGCG	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	502
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 322
BstUI	CGCG	1 cut(s)	135
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	409, 471
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	140, 144, 174, 432
Cfr10I	RCCGGY	2 cut(s)	142, 397
Cfr42I	CCGCGG	1 cut(s)	136
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	2 cut(s)	218, 410
DdeI	CTNAG	4 cut(s)	326, 345, 506, 513
Eam1104I	CTCTTC	2 cut(s)	81, 246
EarI	CTCTTC	2 cut(s)	81, 246
Eco24I	GRGCYC	2 cut(s)	132, 217
Eco31I	GGTCTC	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	513
EcoRI	GAATTC	2 cut(s)	23, 289
EcoT38I	GRGCYC	2 cut(s)	132, 217
FaeI	CATG	2 cut(s)	221, 413
FaiI	YATR	8 cut(s)	75, 102, 219, 298, 335, 411, 441, 525
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	2 cut(s)	217, 409
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	2 cut(s)	416, 478
FriOI	GRGCYC	2 cut(s)	132, 217
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	3 cut(s)	108, 143, 398
Hin1II	CATG	2 cut(s)	221, 413
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	3 cut(s)	227, 245, 545
HpaII	CCGG	3 cut(s)	108, 143, 398
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	7 cut(s)	226, 232, 250, 329, 379, 507, 544
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	2 cut(s)	185, 379
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	3 cut(s)	409, 434, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 322
HpyF3I	CTNAG	4 cut(s)	326, 345, 506, 513
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	221, 413
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
KspI	CCGCGG	1 cut(s)	136
LmnI	GCTCC	5 cut(s)	70, 135, 212, 238, 427
LweI	GCATC	2 cut(s)	108, 159
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	374
MboII	GAAGA	3 cut(s)	29, 98, 263
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	132, 217
MluCI	AATT	5 cut(s)	23, 163, 233, 289, 551
MlyI	GAGTC	2 cut(s)	239, 554
MmeI	TCCRAC	2 cut(s)	320, 357
MnlI	CCTC	6 cut(s)	34, 178, 292, 302, 456, 508
MroNI	GCCGGC	1 cut(s)	142
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	2 cut(s)	116, 201
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	3 cut(s)	108, 143, 398
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	355
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	127, 322
NaeI	GCCGGC	1 cut(s)	144
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	221, 413
NlaIV	GGNNCC	2 cut(s)	131, 214
OliI	CACNNNNGTG	1 cut(s)	201
PctI	GAATGC	1 cut(s)	355
PdiI	GCCGGC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	2 cut(s)	239, 553
PpsI	GAGTC	2 cut(s)	239, 553
PspN4I	GGNNCC	2 cut(s)	131, 214
RseI	CAYNNNNRTG	2 cut(s)	116, 201
SacII	CCGCGG	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	239, 554
SduI	GDGCHC	2 cut(s)	132, 217
SetI	ASST	7 cut(s)	313, 327, 372, 377, 420, 432, 514
SfaNI	GCATC	2 cut(s)	108, 159
Sfr303I	CCGCGG	1 cut(s)	136
SgrBI	CCGCGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	116, 201
Sse9I	AATT	5 cut(s)	23, 163, 233, 289, 551
SsiI	CCGC	2 cut(s)	133, 135
SspMI	CTAG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	167, 457
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	23, 163, 233, 289, 551
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	3 cut(s)	23, 163, 289
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.