Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

63212104 .. 63213816

Gene Structure 1713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGTGGACAGCTGACGTTGGATATTGAGCAAGAGCAACCGGTGGATGTGAATGATGACCTAACAAGGGAGCTTGCGTTTTATACACAGGCTCTAAATGGAACGAGGATGGCCTTTGAGAAGCTTCAGTCGATGGGGCTTCCATTTCTGAGACCTGAGGACTACTATGCAGAAATGGTGAAGTCGGATTCCCACATGGAGAAAGTGAAGAGCCGGCTTTTGGTGGAGAAGAAGAACATGGAGGAAGCTGATGAGAGAAGGAAGGCCAGAGAGGCCAAGAAATTGTCTAAAGAGATTCAGAACCAGAAGTTGAAGGAGAGAGCTAAGCAGAAAAAGGAGTCTATTGAGTCTGTGAAGAAGTGGAGGAAGCAGAGGCAGCAAAGTGGGTTTGCTGGGGGTGACAAAGGAAGTGAGTTGGATTTGGCCTTTGAAGATGGCAAACCATTTGAGAAGTCAAGTAATAAGAGGCCTGGTGTAGCTCCCGGAGATCGGTCTGGAGGGAAGGCAAAATATGCTGGAAAGGGGAAAAAGCCAAAGAAGAGAGAAATCAAGGATTCCAAGTTTGGATTTGGTGGGAGGAAAGGTTCCAGGAAGCAAAATGTCGCTGAAACCACCAACGATTTGAGAGGGTTCAATAAAGAAGATGGTTTCTCAAAAAATAAGAAAAGGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

225

Amino Acids

25.65

Weight (kDa)

9.87

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	10 - 221	1e-61	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	110
AfiI	CCNNNNNNNGG	3 cut(s)	67, 220, 489
AgeI	ACCGGT	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	313, 431, 634
AjnI	CCWGG	2 cut(s)	469, 587
AloI	GAACNNNNNNTCC	2 cut(s)	568, 600
AluBI	AGCT	6 cut(s)	13, 73, 124, 248, 323, 479
AluI	AGCT	6 cut(s)	13, 73, 124, 248, 323, 479
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	5 cut(s)	111, 264, 273, 423, 467
ApeKI	GCWGC	1 cut(s)	376
AsiGI	ACCGGT	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	2 cut(s)	190, 410
AxyI	CCTNAGG	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	4 cut(s)	103, 127, 428, 638
BciT130I	CCWGG	2 cut(s)	471, 589
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	377
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	378
Bme1390I	CCNGG	3 cut(s)	471, 483, 589
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	3 cut(s)	471, 483, 589
BpmI	CTGGAG	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 568, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 220, 489
Bse118I	RCCGGY	2 cut(s)	40, 213
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	471, 589
BseGI	GGATG	2 cut(s)	52, 114
BseLI	CCNNNNNNNGG	3 cut(s)	67, 220, 489
BseMII	CTCAG	2 cut(s)	140, 147
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	392
BshFI	GGCC	5 cut(s)	113, 266, 275, 425, 469
BshTI	ACCGGT	1 cut(s)	40
BsiSI	CCGG	3 cut(s)	41, 214, 483
BslI	CCNNNNNNNGG	3 cut(s)	67, 220, 489
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	5 cut(s)	113, 266, 275, 425, 469
Bso31I	GGTCTC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	487
Bsp1720I	GCTNAGC	1 cut(s)	324
BspANI	GGCC	5 cut(s)	113, 266, 275, 425, 469
BspCNI	CTCAG	2 cut(s)	141, 148
BspLI	GGNNCC	1 cut(s)	586
BspQI	GCTCTTC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	145
BsrFI	RCCGGY	2 cut(s)	40, 213
BssAI	RCCGGY	2 cut(s)	40, 213
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	471, 589
Bst6I	CTCTTC	2 cut(s)	203, 533
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	75, 215
BstDEI	CTNAG	3 cut(s)	149, 156, 324
BstF5I	GGATG	2 cut(s)	52, 114
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 376, 512
BstNI	CCWGG	2 cut(s)	471, 589
BstSCI	CCNGG	3 cut(s)	469, 481, 587
BstV1I	GCAGC	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	5 cut(s)	113, 266, 275, 425, 469
BtsCI	GGATG	2 cut(s)	52, 114
Cac8I	GCNNGC	2 cut(s)	75, 215
Cfr10I	RCCGGY	2 cut(s)	40, 213
CspAI	ACCGGT	1 cut(s)	40
CviAII	CATG	2 cut(s)	196, 238
DdeI	CTNAG	3 cut(s)	149, 156, 324
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	2 cut(s)	203, 533
EarI	CTCTTC	2 cut(s)	203, 533
Eco147I	AGGCCT	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	156
EcoRII	CCWGG	2 cut(s)	469, 587
FaeI	CATG	2 cut(s)	199, 241
FaiI	YATR	5 cut(s)	84, 168, 197, 239, 513
FatI	CATG	2 cut(s)	195, 237
Fnu4HI	GCNGC	1 cut(s)	377
FokI	GGATG	2 cut(s)	59, 121
Fsp4HI	GCNGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	377
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	5 cut(s)	113, 266, 275, 425, 469
HapII	CCGG	3 cut(s)	41, 214, 483
Hin1II	CATG	2 cut(s)	199, 241
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	5 cut(s)	188, 295, 338, 347, 554
HpaII	CCGG	3 cut(s)	41, 214, 483
HphI	GGTGA	2 cut(s)	190, 410
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	3 cut(s)	150, 187, 300
Hpy188III	TCNNGA	1 cut(s)	495
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	4 cut(s)	252, 256, 307, 496
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 376, 512
HpyF3I	CTNAG	3 cut(s)	149, 156, 324
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	199, 241
KroI	GCCGGC	1 cut(s)	213
KroNI	GCCGGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	487
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	70, 484
Lsp1109I	GCAGC	1 cut(s)	388
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	7 cut(s)	220, 241, 244, 367, 443, 550, 653
MluCI	AATT	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	347, 356
MmeI	TCCRAC	2 cut(s)	165, 396
MroNI	GCCGGC	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	3 cut(s)	41, 214, 483
MspR9I	CCNGG	3 cut(s)	471, 483, 589
MvaI	CCWGG	2 cut(s)	471, 589
MwoI	GCNNNNNNNGC	3 cut(s)	272, 376, 512
NaeI	GCCGGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	1 cut(s)	487
NgoMIV	GCCGGC	1 cut(s)	213
NlaIII	CATG	2 cut(s)	199, 241
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	203
PdiI	GCCGGC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	188, 295, 554
PfoI	TCCNGGA	2 cut(s)	481, 587
PinAI	ACCGGT	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	378
PleI	GAGTC	2 cut(s)	346, 355
PpsI	GAGTC	2 cut(s)	346, 355
Psp6I	CCWGG	2 cut(s)	469, 587
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	469, 587
PspN4I	GGNNCC	1 cut(s)	586
PvuII	CAGCTG	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	203
SatI	GCNGC	1 cut(s)	377
Sau3AI	GATC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	347, 356
ScrFI	CCNGG	3 cut(s)	471, 483, 589
SfiI	GGCCNNNNNGGCC	1 cut(s)	272
Sse9I	AATT	1 cut(s)	281
SseBI	AGGCCT	1 cut(s)	469
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	3 cut(s)	469, 481, 587
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	131
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	188, 295, 554
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.