Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

6227831 .. 6232004

Gene Structure 4174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGAAACAACAAAGAAGGTCTGTTAGCGAAGCTCAGAGATATGAGTTGGCCTGAGAATGCTAAATGGGTGGACAAGCTTACGTCGGATATTGAGCAAGAGCAACCGGTGGATGTGCATGATGGCCTGACAAGGGAGCTTGCATTTTATACACAGGCTCTAACTCGAATCAGGATGGCCTTTGAGAAGCTTCAGTTAATGGGGCTTCCATTTCTGAGACCTGAGGACTACTATGCAGAAATGGTGAAGTCCCAGTCCCAATTCGGGAAAGTGAAGAGCCACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

95

Amino Acids

11.21

Weight (kDa)

6.73

Isoelectric Point (pI)

60.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	3 - 93	1.1e-25	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	133, 264
AgeI	ACCGGT	1 cut(s)	106
AluBI	AGCT	4 cut(s)	34, 79, 139, 190
AluI	AGCT	4 cut(s)	34, 79, 139, 190
Alw26I	GTCTC	1 cut(s)	211
AoxI	GGCC	3 cut(s)	50, 124, 177
AsiGI	ACCGGT	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	222
BccI	CCATC	2 cut(s)	116, 169
BcoDI	GTCTC	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 264
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	253
Bse21I	CCTNAGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	118, 180
BseLI	CCNNNNNNNGG	2 cut(s)	133, 264
BseMII	CTCAG	4 cut(s)	45, 49, 206, 213
BseNI	ACTGG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	52, 126, 179
BshTI	ACCGGT	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	2 cut(s)	235, 241
BslI	CCNNNNNNNGG	2 cut(s)	133, 264
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	235, 241
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	52, 126, 179
Bso31I	GGTCTC	1 cut(s)	211
BspANI	GGCC	3 cut(s)	52, 126, 179
BspCNI	CTCAG	4 cut(s)	46, 48, 207, 214
BspQI	GCTCTTC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	4 cut(s)	35, 54, 215, 222
BstF5I	GGATG	2 cut(s)	118, 180
BstMAI	GTCTC	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	52, 126, 179
BtsCI	GGATG	2 cut(s)	118, 180
Cac8I	GCNNGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	106
CviAII	CATG	1 cut(s)	119
DdeI	CTNAG	4 cut(s)	35, 54, 215, 222
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	122
FaiI	YATR	4 cut(s)	44, 120, 150, 234
FaqI	GGGAC	2 cut(s)	235, 241
FatI	CATG	1 cut(s)	118
FokI	GGATG	2 cut(s)	125, 187
HaeIII	GGCC	3 cut(s)	52, 126, 179
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	1 cut(s)	122
HindIII	AAGCTT	2 cut(s)	77, 188
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	38, 88, 216
Hpy188III	TCNNGA	2 cut(s)	172, 265
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	118, 143, 236
HpyF3I	CTNAG	4 cut(s)	35, 54, 215, 222
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	122
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	7 cut(s)	66, 120, 140, 140, 157, 234, 266
MaeII	ACGT	1 cut(s)	83
MboII	GAAGA	1 cut(s)	286
MluCI	AATT	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	1 cut(s)	217
MseI	TTAA	1 cut(s)	197
MspI	CCGG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	197
SetI	ASST	7 cut(s)	22, 36, 81, 86, 141, 192, 223
Sse9I	AATT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.