RLG00000019704

Small subunit processome component 20 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
55711856 .. 55712405
550 bp
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UTR
Exon/CDS
Intron
RLM00000019704

Sequence Viewer

Length: 369 bp
ATGTTGAATCACATAGCAGCTGGTATTGAGTGGAATCCAACTGTTGATCAGACTGACCTTTTTATATTTGTACATGGCCTGATTGAAGATGGAATAAAAGAAGAAAATGGGAATAAGTGCTTGAATTCCAAGTATGAAGATGTCTTATCTGCAACACTTGGACGCCTAACTTCGTTGGTCAGGTTGCATTTACCTGCCATTGAAGATCAAGCAGATAGTATAAAAGCAGTGCTGTTTGATATTGCTCGTAGTTGGTTAAATACCGGCAGTTCTCGAATGGAGTCATGTCTGATCGAGGTTGTTTACTTTACTTTTGCGGGGCAACAAAGTTCCTCTTTCCTCCGATCATCTACATCTATTGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.51

Weight (kDa)

4.73

Isoelectric Point (pI)

65.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AciI CCGC 1 cut(s) 317
AcsI RAATTY 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 4 cut(s) 7, 86, 124, 203
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 124
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 83
BclI TGATCA 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 263
BseXI GCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 264
BsnI GGCC 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 4 cut(s) 46, 205, 291, 344
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 78
BspHI TCATGA 1 cut(s) 365
BspMI ACCTGC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 263
BssMI GATC 4 cut(s) 46, 205, 291, 344
BssNI GRCGYC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 70
BstKTI GATC 4 cut(s) 49, 208, 294, 347
BstMBI GATC 4 cut(s) 46, 205, 291, 344
BstV1I GCAGC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 202
CciI TCATGA 1 cut(s) 365
Cfr10I RCCGGY 1 cut(s) 263
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 71
CviAII CATG 3 cut(s) 74, 285, 366
CviJI RGCY 2 cut(s) 20, 78
CviKI_1 RGCY 2 cut(s) 20, 78
CviQI GTAC 1 cut(s) 71
DpnI GATC 4 cut(s) 48, 207, 293, 346
DpnII GATC 4 cut(s) 46, 205, 291, 344
EcoRI GAATTC 1 cut(s) 124
FaeI CATG 3 cut(s) 77, 288, 369
FaiI YATR 7 cut(s) 14, 65, 75, 135, 221, 286, 367
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FatI CATG 3 cut(s) 73, 284, 365
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 3 cut(s) 77, 288, 369
HinfI GANTC 4 cut(s) 7, 34, 281, 362
HpaII CCGG 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 51, 291, 344
Hpy188III TCNNGA 2 cut(s) 273, 366
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 152, 187
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 3 cut(s) 77, 288, 369
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 4 cut(s) 46, 205, 291, 344
LpnPI CCDG 5 cut(s) 6, 92, 166, 207, 277
Lsp1109I GCAGC 1 cut(s) 29
MalI GATC 4 cut(s) 48, 207, 293, 346
MboI GATC 4 cut(s) 46, 205, 291, 344
MboII GAAGA 4 cut(s) 98, 113, 149, 215
MluCI AATT 1 cut(s) 124
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 3 cut(s) 289, 343, 350
MseI TTAA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 264
NdeII GATC 4 cut(s) 46, 205, 291, 344
NlaIII CATG 3 cut(s) 77, 288, 369
PagI TCATGA 1 cut(s) 365
PfeI GAWTC 3 cut(s) 7, 34, 362
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 4 cut(s) 46, 205, 291, 344
SchI GAGTC 1 cut(s) 290
SetI ASST 5 cut(s) 22, 60, 185, 196, 300
Sse9I AATT 1 cut(s) 124
SsiI CCGC 1 cut(s) 317
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 274, 294
TasI AATT 1 cut(s) 124
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 3 cut(s) 7, 34, 362
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 1 cut(s) 234
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 150, 354
TspRI CASTG 1 cut(s) 234
XapI RAATTY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.