Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

55566274 .. 55569519

Gene Structure 3246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACTACACAACCTATTTACCATTCTGCTCCTCCACCTTCAGCTTATGAGCAACCACGACTAATTTCATATCTAAAGCAGCTTCACCCAATTTCAATGGAACCTGACCAGATACATAAAGATCAATTGGACGCAAGGATTTCGAAGACGCAGGATTCTTTTGAAGCTATCCGCTCCCAACAATCAACATTCCAGGCTGAGATTTTAGCAGAACTACGTCAGCTGCGTTTGGGTCCCAAAAACCCAGTGACTGAAGCCGATTCGAAGTTGTTGAAGTTTGGGTCACTACCAGCTACTACGGTTGCTACGTCTCTTACAGCGTCGGGGAAGACATCGCCCTCATCGTCCTCATCTACTACTACAGCTGGAGGTAGTATTCAAATCTTAGAACCAAATTTTAATCTATCACCCCATGAAGCAATATTGGATTTGAATAATGATATTTCTATTGTGGTGGTATCTGGAACTAGTAGTGAGGATAATATTGCTGTTGGTATGACTGAGAAATTGAATATTGGGCGTAATAGCATGGGTGCTAGAACGGGAAATAGGGAGTCTGAGATTCAAAGCATTGAAGGGGTGAACAGTGTGATGTGGAAGAATAATGTTCAATCACATTATTTTCAGCACACTAACTTTGACAATGGATCATCTGTTGGGAACACACTTCTCGGTTCTAAGGCTCATACTTCCATGGATGTTGGCAATGGATTATTAAGTGGTAATATTGGTGAAGAAAATTTGTCTGCTGGAGACAAATATGAAAAAGTGCAAGTGACTTCTGAAATGGTGCTAGAGAAAATATGGGAGAAATGGAAATCAAAAGGTCATGCCAAATTTGCAAGTGAAGGGAATGCACGGAGCTGGATTCTACTGTTGGGGAATGGCTCAATCTTGACAGAGAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

32.97

Weight (kDa)

5.93

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	174
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	3 cut(s)	394, 739, 836
AcuI	CTGAAG	2 cut(s)	24, 273
AgsI	TTSAA	9 cut(s)	96, 164, 274, 380, 433, 511, 566, 575, 611
AhlI	ACTAGT	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	7 cut(s)	44, 82, 167, 223, 293, 365, 864
AluI	AGCT	7 cut(s)	44, 82, 167, 223, 293, 365, 864
Alw26I	GTCTC	2 cut(s)	315, 747
AlwI	GGATC	1 cut(s)	655
AlwNI	CAGNNNCTG	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	79, 223
ApoI	RAATTY	3 cut(s)	394, 739, 836
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	77, 399, 592, 743
AsuII	TTCGAA	2 cut(s)	143, 263
AvaII	GGWCC	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	152, 335
BbvI	GCAGC	2 cut(s)	91, 210
BccI	CCATC	1 cut(s)	900
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BciT130I	CCWGG	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	315, 747
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	3 cut(s)	468, 537, 794
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	2 cut(s)	80, 224
BlsI	GCNGC	2 cut(s)	81, 225
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	102, 234, 235
BmrFI	CCNGG	1 cut(s)	194
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	152, 335
BpmI	CTGGAG	2 cut(s)	387, 771
Bpu14I	TTCGAA	2 cut(s)	143, 263
BsaJI	CCNNGG	1 cut(s)	693
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	693
BseGI	GGATG	1 cut(s)	703
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	3 cut(s)	189, 492, 549
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	91, 210
BslFI	GGGAC	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	315, 747
BsmBI	CGTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	859
Bsp119I	TTCGAA	2 cut(s)	143, 263
Bsp143I	GATC	2 cut(s)	121, 647
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	1 cut(s)	172
BspCNI	CTCAG	3 cut(s)	190, 493, 550
BspLI	GGNNCC	3 cut(s)	102, 234, 235
BspPI	GGATC	1 cut(s)	655
BspT104I	TTCGAA	2 cut(s)	143, 263
BsrBI	CCGCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	2 cut(s)	121, 647
BssT1I	CCWWGG	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	301, 587, 876
BstBI	TTCGAA	2 cut(s)	143, 263
BstDEI	CTNAG	5 cut(s)	198, 385, 501, 558, 678
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	1 cut(s)	703
BstKTI	GATC	2 cut(s)	124, 650
BstMAI	GTCTC	2 cut(s)	315, 747
BstMBI	GATC	2 cut(s)	121, 647
BstMWI	GCNNNNNNNGC	1 cut(s)	839
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	91, 210
BstV2I	GAAGAC	2 cut(s)	152, 335
BtgI	CCRYGG	1 cut(s)	693
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	703
BtsIMutI	CAGTG	2 cut(s)	252, 592
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	3 cut(s)	140, 157, 309
CviAII	CATG	4 cut(s)	413, 529, 694, 830
DdeI	CTNAG	5 cut(s)	198, 385, 501, 558, 678
DpnI	GATC	2 cut(s)	123, 649
DpnII	GATC	2 cut(s)	121, 647
Eco130I	CCWWGG	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	2 cut(s)	24, 273
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	4 cut(s)	416, 532, 697, 833
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	4 cut(s)	412, 528, 693, 829
Fnu4HI	GCNGC	2 cut(s)	80, 224
FokI	GGATG	1 cut(s)	710
Fsp4HI	GCNGC	2 cut(s)	80, 224
FspBI	CTAG	3 cut(s)	468, 537, 794
GluI	GCNGC	2 cut(s)	80, 224
GsuI	CTGGAG	2 cut(s)	387, 771
HgaI	GACGC	3 cut(s)	140, 157, 309
Hin1II	CATG	4 cut(s)	416, 532, 697, 833
HinfI	GANTC	5 cut(s)	155, 260, 554, 562, 868
HphI	GGTGA	4 cut(s)	77, 399, 592, 743
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	559, 784
Hpy188III	TCNNGA	2 cut(s)	462, 895
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	48, 569, 842
HpyCH4III	ACNGT	3 cut(s)	301, 587, 876
HpyCH4IV	ACGT	2 cut(s)	217, 308
HpyCH4V	TGCA	3 cut(s)	772, 842, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	839
HpyF3I	CTNAG	5 cut(s)	198, 385, 501, 558, 678
HpySE526I	ACGT	2 cut(s)	217, 308
Hsp92II	CATG	4 cut(s)	416, 532, 697, 833
KflI	GGGWCCC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	121, 647
LmnI	GCTCC	3 cut(s)	34, 179, 861
Lsp1109I	GCAGC	2 cut(s)	91, 210
MaeI	CTAG	3 cut(s)	468, 537, 794
MaeII	ACGT	2 cut(s)	217, 308
MaeIII	GTNAC	3 cut(s)	247, 282, 775
MalI	GATC	2 cut(s)	123, 649
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	2 cut(s)	121, 647
MboII	GAAGA	4 cut(s)	157, 340, 610, 746
MfeI	CAATTG	1 cut(s)	125
MluCI	AATT	7 cut(s)	63, 90, 125, 394, 506, 739, 836
MlyI	GAGTC	1 cut(s)	563
MnlI	CCTC	5 cut(s)	42, 349, 358, 362, 469
MseI	TTAA	2 cut(s)	399, 716
MspA1I	CMGCKG	2 cut(s)	223, 365
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	839
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	2 cut(s)	121, 647
NlaIII	CATG	4 cut(s)	416, 532, 697, 833
NlaIV	GGNNCC	3 cut(s)	102, 234, 235
NmuCI	GTSAC	3 cut(s)	247, 282, 775
NspV	TTCGAA	2 cut(s)	143, 263
PcsI	WCGNNNNNNNCGW	3 cut(s)	223, 305, 341
PctI	GAATGC	1 cut(s)	859
PfeI	GAWTC	4 cut(s)	155, 260, 562, 868
PkrI	GCNGC	2 cut(s)	81, 225
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	102, 234, 235
PspPI	GGNCC	1 cut(s)	233
PspPPI	RGGWCCY	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	251
PvuII	CAGCTG	2 cut(s)	223, 365
SaqAI	TTAA	2 cut(s)	399, 716
SatI	GCNGC	2 cut(s)	80, 224
Sau3AI	GATC	2 cut(s)	121, 647
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	2 cut(s)	143, 263
SinI	GGWCC	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	467
Sse9I	AATT	7 cut(s)	63, 90, 125, 394, 506, 739, 836
SsiI	CCGC	1 cut(s)	172
SspI	AATATT	4 cut(s)	423, 484, 514, 727
SspMI	CTAG	3 cut(s)	468, 537, 794
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	3 cut(s)	301, 587, 876
TaiI	ACGT	2 cut(s)	220, 311
TaqI	TCGA	2 cut(s)	143, 263
TasI	AATT	7 cut(s)	63, 90, 125, 394, 506, 739, 836
TfiI	GAWTC	4 cut(s)	155, 260, 562, 868
Tru1I	TTAA	2 cut(s)	399, 716
Tru9I	TTAA	2 cut(s)	399, 716
TscAI	CASTG	2 cut(s)	252, 592
TseFI	GTSAC	3 cut(s)	247, 282, 775
TseI	GCWGC	2 cut(s)	79, 223
Tsp45I	GTSAC	3 cut(s)	247, 282, 775
TspDTI	ATGAA	3 cut(s)	57, 429, 777
TspGWI	ACGGA	1 cut(s)	874
TspRI	CASTG	2 cut(s)	252, 592
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	3 cut(s)	394, 739, 836
XspI	CTAG	3 cut(s)	468, 537, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.